Job Description P42591 Confidence 99.34% Date Thu Jan 5 12:01:37 GMT 2012 Rank 1 Aligned Residues 261 % Identity 14% Template d2fgqx1 SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.45

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		S	F	R	F	Y	G	E	L	G	V	G	G	Y	M	D	L	E	G	E	N	K	H	K	Y	S	D	G	T	Y	I	E	G	G	L	E	M	K	Y	G	S	W	F	G	L	.	.	.	.	I	Y	G	E	G	W	T	V	Q	A	D	H	D	G	N	A	W	V	P	D	H	S	W	G	G	F	E	G	G	I	N	R
Query Conservation																																														.	.	.	.
Alig confidence																.	.	.	.	.																										.	.	.	.																	.
Template Conservation																.	.	.	.	.																																														.
Template Sequence		S	V	T	L	F	G	I	V	D	T	N	V	A	Y	.	.	.	.	.	V	N	K	D	A	A	G	D	S	R	Y	G	L	G	T	S	G	A	S	T	S	R	L	G	L	R	G	T	E	D	L	G	G	G	L	K	A	G	F	W	L	E	G	E	I	.	F	G	D	D	G	N	A	S	G	F	N	F	K	R	R
Template Known Secondary structure																.	.	.	.	.		S			T	T	S										S	S	S														T	T												.		T	T	T	T	S	T	T						S
Template Predicted Secondary structure																.	.	.	.	.																																														.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.						.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.															.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query Sequence		F	Y	G	G	Y	R	T	N	D	G	T	E	I	M	L	S	L	R	Q	D	S	S	L	D	D	L	Q	W	W	G	D	F	T	P	D	L	G	Y	V	I	P	N	T	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	M	T	A	L	K	V	Q	.	N	L	S	G	N	F	R	Y	S	V	T	A
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Alig confidence													.						.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation													.						.
Template Sequence		S	T	V	S	L	S	G	N	F	G	E	.	V	R	L	G	R	.	D	L	V	P	T	S	Q	K	L	T	S	Y	D	L	F	S	A	T	G	I	G	P	F	M	G	F	R	N	W	A	A	G	Q	G	A	D	D	N	G	I	R	A	N	N	L	I	S	Y	Y	T	P	N	F	G	G	F	N	A	G	F	G	Y
Template Known Secondary structure									T	T			.				S	S	.										G	G	G		T	T	T	T		S	S	S	S				S	S		T	T				S	T	T	T	T	S	S			S	S									B	T	T
Template Predicted Secondary structure													.						.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		188	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		T	P	A	G	H	H	D	E	.	.	.	S	K	A	W	L	H	F	G	K	Y	D	R	Y	D	D	K	Y	T	Y	P	A	M	M	N	G	Y	I	Q	Y	D	L	A	E	G	I	T	W	M	N	G	L	E	I	T	D	G	T	G	Q	L	Y	L	T	G	L	L	T	P	N	F	A	A	R	A	W	H	H	T	G
Query Conservation										.	.	.
Alig confidence										.	.	.																			.	.																				.																.	.	.
Template Conservation																															.	.																				.																.	.	.
Template Sequence		A	F	D	E	K	Q	T	I	G	T	A	D	S	V	G	R	Y	I	G	G	Y	V	A	Y	D	N	G	P	L	.	.	S	A	S	L	G	L	A	Q	Q	K	T	A	V	G	G	L	A	T	D	.	R	D	E	I	T	L	G	A	S	Y	N	F	G	V	A	.	.	.	K	L	S	G	L	L	Q	Q	T	K	F
Template Known Secondary structure					T	T			B	T	T	B	S	S	T	T												S	S		.	.														T	T					.													S	S		.	.	.
Template Predicted Secondary structure																															.	.																				.																.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	D	G	L	D	V	P	G	S	E	S	G	M	M	V	S	A	M	Y	E	A	L	K	G	V	Y	L	S	T	A	Y	T	Y	A	K	H	R	P	D	H	A	D	D	E	T	T	S	F	M	Q	F	G	I	W	Y	E	Y	G	G	G
Query Conservation
Alig confidence						.																																.	.	.
Template Conservation						.																																.	.	.
Template Sequence		K	R	D	I	.	G	G	D	I	K	T	N	S	Y	M	L	G	A	S	A	P	V	G	G	V	G	E	V	K	L	Q	Y	A	L	Y	D	.	.	.	Q	K	A	I	D	S	K	A	H	Q	I	T	L	G	Y	V	H	N	L	S	K	R
Template Known Secondary structure				T	T	.	S																	T	T	T												.	.	.		G	G	G	T														S	S	S	S
Template Predicted Secondary structure						.																																.	.	.
Template SS confidence
		229	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions