Job Description P42591 Confidence 99.33% Date Thu Jan 5 12:01:37 GMT 2012 Rank 2 Aligned Residues 297 % Identity 15% Template d1phoa_ SCOP info Transmembrane beta-barrels Porins Porin Resolution 3.00

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		I	T	S	T	S	S	P	S	F	R	F	Y	G	E	L	G	V	G	G	Y	M	D	L	E	G	E	N	K	H	K	Y	S	D	G	T	Y	I	E	G	G	L	E	M	K	Y	.	.	.	.	.	G	S	W	F	G	L	I	Y	G	E	G	W	T	V	Q	A	D	H	D	G	N	A	W	V	P	D	H	S	W	G
Query Conservation																																															.	.	.	.	.
Alig confidence																														.	.	.															.	.	.	.	.					.	.	.	.	.	.	.													.	.	.	.
Template Conservation																														.	.	.																								.	.	.	.	.	.	.													.	.	.	.
Template Sequence		I	Y	N	K	D	G	N	K	L	D	V	Y	G	K	V	K	A	M	H	Y	M	S	D	N	A	S	K	D	.	.	.	G	D	Q	S	Y	I	R	F	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	Y	.	.	.	.	.	.	.	G	R	W	E	A	E	F	A	G	N	K	A	.	.	.	.	E	S	D
Template Known Secondary structure						S	S	B																S	S	S	S			.	.	.																	S	S	S					.	.	.	.	.	.	.									S	S	S		.	.	.	.	T	T
Template Predicted Secondary structure																														.	.	.																								.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.					.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.												.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																.																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	E	G	G	I	N	R	F	Y	G	G	Y	R	.	T	N	D	G	T	E	I	M	L	S	L	R	Q	D	S	S	L	D	D	L	Q	W	W	G	D	F	T	P	D	L	G	Y	V	I	P	N	T	R	D	I	.	.	.	.	.	.	.	.	.	.	.	M	T	A	L	K	V	Q	N	L	S	G	N	F	R
Query Conservation																.																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.						.						.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.						.
Template Sequence		T	A	Q	Q	K	T	R	L	A	F	A	G	L	K	Y	K	D	L	G	S	.	F	D	Y	G	R	.	N	L	G	A	L	Y	D	V	E	A	W	T	D	M	F	P	E	F	G	G	D	S	S	A	Q	T	D	N	F	M	T	K	R	A	S	G	L	A	T	Y	R	N	T	D	F	F	G	V	I	D	G	L	N
Template Known Secondary structure																	T	T	T			.						.				S	T					T	T	T			S	S	S			S		S	S			T	T	S	T	T	T	S												S	T	T	T	T		T	T
Template Predicted Secondary structure																						.						.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		183	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure															.	.																														.	.	.	.	.
Query SS confidence															.	.																														.	.	.	.	.
Query Sequence		Y	S	V	T	A	T	P	A	G	H	H	D	E	.	.	S	K	A	W	L	H	F	G	K	Y	D	R	Y	D	D	K	Y	T	Y	P	A	M	M	N	G	Y	I	Q	Y	.	.	.	.	.	D	L	A	E	G	I	T	W	M	N	G	L	E	I	T	D	G	T	G	Q	L	Y	L	T	G	L	L	T	P	N	F
Query Conservation															.	.																														.	.	.	.	.
Alig confidence															.	.																														.	.	.	.	.																											.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		L	T	L	Q	Y	Q	G	K	N	E	N	R	D	V	K	K	Q	N	G	D	G	F	G	T	S	L	T	Y	D	F	G	G	S	D	F	A	I	S	G	A	Y	T	N	S	D	R	T	N	E	Q	N	L	Q	S	R	G	T	G	K	R	A	E	A	W	A	T	G	L	K	Y	D	A	N	N	I	.	.	.	Y	L
Template Known Secondary structure										B		S	S		S	T	T		B		S											T	T	T	T														G	G	G	T	T	S	S	S	S		S	S														T	T		.	.	.
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.
Predicted Secondary structure																						.																												.	.																								.
Query SS confidence																						.																												.	.																								.
Query Sequence		A	A	R	A	W	H	H	T	G	R	A	D	G	L	D	V	P	G	S	E	.	S	G	M	M	V	S	A	M	Y	E	A	L	K	G	V	Y	L	S	T	A	Y	T	Y	A	K	H	R	.	.	P	D	H	A	D	D	E	T	T	S	F	M	Q	F	G	I	W	Y	E	Y	G	G	G	.	R	F	A	T	A	F
Query Conservation																						.																												.	.																								.
Alig confidence																						.																												.	.																								.
Template Conservation
Template Sequence		A	T	F	Y	S	E	T	R	K	M	T	P	I	T	G	G	F	A	N	K	T	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	L	G	Y	V	L	S	K	G	K	D	I	E	G	I	G	D	E	D	L	V	N	Y	I	D	V	G	A	T	Y	Y	F	N	K	N	M	S	A	F	V	D	Y
Template Known Secondary structure										S		S			S	S	S	S		S														S	S	S														S	B	T	T	T	B																S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		332	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		D	S	.	R	F	Y	M	K	N	A	S	H	D	P	S	D	Q	I	F	L	M	Q	Y	F	Y
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		K	I	N	Q	L	D	S	D	N	K	L	N	I	N	N	D	D	I	V	A	V	G	M	T	Y
Template Known Secondary structure								S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions