Job Description P42591 Confidence 59.97% Date Thu Jan 5 12:01:37 GMT 2012 Rank 12 Aligned Residues 150 % Identity 11% Template d1g90a_ SCOP info Transmembrane beta-barrels OMPA-like Outer membrane protein Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.							.	.	.	240	.	.
Predicted Secondary structure																	.	.	.	.	.	.																				.																												.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.																				.																												.	.	.	.	.	.
Query Sequence		N	L	S	G	N	F	R	Y	S	V	T	A	T	P	A	.	.	.	.	.	.	G	H	H	D	E	S	K	A	W	L	H	F	G	K	Y	D	R	Y	D	.	D	K	Y	T	Y	P	A	M	M	N	G	Y	I	Q	Y	D	L	A	E	G	I	T	W	M	N	G	L	.	.	.	.	.	.	E	I	T	D	G	T
Query Conservation																	.	.	.	.	.	.																				.																												.	.	.	.	.	.
Alig confidence														.			.	.	.	.	.	.																				.					.	.																						.	.	.	.	.	.
Template Conservation														.																																	.	.
Template Sequence		T	W	Y	T	G	A	K	L	G	F	S	Q	.	Y	H	D	T	G	F	I	N	N	N	G	P	T	H	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	V	.	.	G	F	E	M	G	Y	D	F	L	G	R	M	P	Y	K	G	S	V	E	N	G	A	Y	K	A	Q	G	V	Q	L	T	A	K
Template Known Secondary structure														.			S	S	S			B	S	S					S	S													T	T	T		.	.											S		T	T		S	S				S
Template Predicted Secondary structure														.																																	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.						.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.																																		.	.	.
Query SS confidence																																				.	.	.	.	.																																		.	.	.
Query Sequence		G	Q	L	Y	L	T	G	L	L	T	P	N	F	A	A	R	A	W	H	H	T	G	R	A	D	G	L	D	V	P	G	S	E	S	.	.	.	.	.	G	M	M	V	S	A	M	Y	E	A	L	K	G	V	Y	L	S	T	A	Y	T	Y	A	K	H	R	P	D	H	A	D	D	E	.	.	.	T	T	S	F	M
Query Conservation																																				.	.	.	.	.																																		.	.	.
Alig confidence																																				.	.	.	.	.																																		.	.	.
Template Conservation
Template Sequence		L	G	Y	P	I	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	F	R	A	D	T	K	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	T	P	E	I	A	T	R	L	E	Y	Q	F	T	N	N	I	G	D	A	H	T	I	G	T	R	P	D	N	G	M	L
Template Known Secondary structure						S	S	S	S																		S	B	T	T	B																					T	T																B	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	G	I	W	Y	E	Y	G	G	G	R	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	G	V	S	Y	R	F	G	Q	G	E	A	A
Template Known Secondary structure											S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions