Job Description P42591 Confidence 98.83% Date Thu Jan 5 12:01:37 GMT 2012 Rank 5 Aligned Residues 256 % Identity 14% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																			.	.	.	.																	.	.	.	.	.
Query SS confidence																			.	.	.	.																	.	.	.	.	.
Query Sequence		E	L	G	V	G	G	Y	M	D	L	E	G	E	N	K	H	K	.	.	.	.	Y	S	D	G	T	Y	I	E	G	G	L	E	M	K	Y	G	.	.	.	.	.	S	W	F	G	L	I	Y	G	E	G	W	T	V	Q	A	D	H	D	G	N	A	W	V	P	D	H	S	W	G	G	F	E	G	G	I	N	R	F
Query Conservation																			.	.	.	.																	.	.	.	.	.
Alig confidence																			.	.	.	.																	.	.	.	.	.				.	.	.	.	.	.	.												.	.	.
Template Conservation																																															.	.	.	.	.	.	.												.	.	.
Template Sequence		K	L	D	L	Y	G	K	A	V	G	R	H	V	W	T	T	T	G	D	S	K	N	A	D	Q	T	Y	A	Q	I	G	F	K	G	E	T	Q	I	N	T	D	L	T	G	F	.	.	.	.	.	.	.	G	Q	W	E	Y	R	T	K	A	D	R	.	.	.	A	E	G	E	Q	Q	N	S	N	L	V	R	L	A
Template Known Secondary structure																		S	T	T																			S	S	S	S					.	.	.	.	.	.	.										S	S	.	.	.		T	T			S	T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.												.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.
		124	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170														.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	G	Y	R	.	T	N	D	G	T	E	I	M	L	S	L	R	Q	D	S	S	L	D	D	L	Q	W	W	G	D	F	T	P	D	L	G	Y	V	I	P	N	T	R	D	I	M	T	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	K	V	Q	N	L	S	G	N	F	R	Y	S	V	T	A	T	P
Query Conservation							.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.						.						.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.						.
Template Sequence		F	A	G	L	K	Y	A	E	V	G	S	.	I	D	Y	G	R	.	N	Y	G	I	V	Y	D	V	E	S	Y	T	D	X	A	P	Y	F	S	G	E	T	W	G	G	A	Y	T	D	N	Y	X	T	S	R	A	G	G	L	L	T	Y	R	N	S	D	F	F	G	L	V	D	G	L	S	F	G	I	Q	Y	Q	G
Template Known Secondary structure								T	T	T			.						.				T	T						T	T			S	S	S	S	S	S		S	T	T	T	S	S	S	S	S	T	T	S	S											S	S	S	S	S	S		S	S
Template Predicted Secondary structure													.						.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure								.	.	.																														.	.	.	.
Query SS confidence								.	.	.																														.	.	.	.
Query Sequence		A	G	H	H	D	E	.	.	.	S	K	A	W	L	H	F	G	K	Y	D	R	Y	D	D	K	Y	T	Y	P	A	M	M	N	G	Y	I	Q	Y	.	.	.	.	D	L	A	E	G	I	T	W	M	N	G	L	E	I	T	D	G	T	G	Q	L	Y	L	T	G	L	L	T	P	N	F	A	A	R	A	W	H	H
Query Conservation								.	.	.																														.	.	.	.
Alig confidence								.	.	.																			.	.										.	.	.	.																											.	.	.
Template Conservation																													.	.																																								.	.	.
Template Sequence		K	N	Q	D	N	H	S	I	N	S	Q	N	G	D	G	V	G	Y	T	X	A	Y	E	F	D	G	F	.	.	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A	K	Y	D	A	N	N	V	.	.	.	Y	L	A	A	V	Y	A	E	T
Template Known Secondary structure			B		S	S	S		G	G	G		B		S											T	T		.	.													S	T	T	S	S	S	S	S			S														T	T		.	.	.
Template Predicted Secondary structure																													.	.																																								.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.								.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.																											.	.	.
Query SS confidence																.	.	.	.	.	.	.																											.	.	.
Query Sequence		T	G	R	A	D	G	L	D	V	P	G	S	E	S	.	.	.	.	.	.	.	G	M	M	V	S	A	M	Y	E	A	L	K	G	V	Y	L	S	T	A	Y	T	Y	A	K	H	R	.	.	.	P	D	H	A	D	D	E	T	T	S	F	M	Q	F	G	I	W	Y	E	Y	G	G	G
Query Conservation																.	.	.	.	.	.	.																											.	.	.
Alig confidence																.	.	.	.	.	.	.																											.	.	.
Template Conservation
Template Sequence		R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K	T	Q	N	L	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L	N	G	A	G	G	S	A	D	L	A	K	Y	I	Q	A	G	A	T	Y	Y	F	N	K	N
Template Known Secondary structure		S	S							T	T	T							S														T	T	S														S		T	T	T	T	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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