Job Description P42591 Confidence 55.78% Date Thu Jan 5 12:01:37 GMT 2012 Rank 14 Aligned Residues 240 % Identity 10% Template c3dwoX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue Resolution 2.20 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		F	G	L	I	Y	G	E	G	W	T	V	Q	A	D	H	D	G	N	A	W	V	P	D	H	S	W	G	G	F	E	G	G	I	N	R	F	Y	.	.	G	G	Y	R	T	N	D	G	T	E	I	M	L	S	L	R	Q	D	S	S	L	D	D	L	Q	W	W	G	D	F	T	P	D	L	G	Y	V	I	P	N	T
Query Conservation																																							.	.
Alig confidence																		.																					.	.
Template Conservation																		.
Template Sequence		F	G	L	S	Q	V	V	P	M	G	M	R	S	T	W	D	.	P	N	W	K	G	R	D	F	A	V	D	T	K	I	E	T	I	G	L	T	G	S	L	S	F	K	V	N	D	N	F	S	L	G	A	G	V	I	I	Q	R	T	S	G	F	V	S	Q	N	L	D	L	Y	A	S	A	A	N	S	P	G	M	G
Template Known Secondary structure																		.	T	T	S	T	T	T	T	T		S																	S	S	S	S																												T	S	T	T	T
Template Predicted Secondary structure																		.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		166	.	.	.																						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.					.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Query Sequence		R	D	I	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	L	K	V	Q	N	L	S	G	N	F	R	Y	S	V	T	A	T	P	A	G	H	H	D	E	.	.	.	.	S	K	A	W	L	H	F	G	K	Y	D	R	Y	D	D	K	Y	T	Y	P	A	M	M	N	G
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.																				.	.	.	.
Template Conservation																																	.
Template Sequence		G	I	P	F	P	A	S	N	S	S	A	L	M	R	V	K	V	D	N	T	S	P	G	F	F	A	G	A	V	W	K	.	P	T	D	R	D	T	L	G	F	A	Y	H	A	K	I	R	N	K	L	K	G	H	Y	N	L	Y	D	H	D	G	G	L	T	E	G	A	I	E	G	G	T	P	G	L	A	Y	P	G
Template Known Secondary structure		S	S				T	T	S	S																							.	S	S	S	S											B														S	T	T								T	T						S	T	T
Template Predicted Secondary structure																																	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.															.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	I	Q	Y	D	L	A	E	G	I	T	W	M	N	G	L	E	I	T	D	G	T	G	Q	L	Y	L	T	G	L	L	T	P	N	F	A	A	R	A	W	H	H	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	A	D	G	L	D	V	P	G	S	E	S	G	M	M	V	S	A	M	Y	E	A
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.
Template Sequence		L	D	L	R	M	G	A	S	A	S	A	R	L	D	I	P	A	Y	A	S	L	D	W	V	H	Q	F	N	D	R	L	S	.	.	L	G	A	S	A	T	W	T	E	W	S	S	F	Q	D	L	T	L	K	S	H	G	N	T	I	V	S	I	P	Y	T	Y	R	N	T	W	T	L	A	V	G	G	D	Y	K	V
Template Known Secondary structure						S										B													S	S	S			.	.										G	G	G									T	T																								S
Template Predicted Secondary structure																																		.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.							.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.
Predicted Secondary structure														.	.	.	.	.	.																												.
Query SS confidence														.	.	.	.	.	.																												.
Query Sequence		L	K	G	V	Y	L	S	T	A	Y	T	Y	.	.	.	.	.	.	A	K	H	R	P	D	H	A	D	D	E	T	T	S	F	M	Q	F	G	I	W	Y	E	Y	G	G	G	.	R	F	A	T	A	F
Query Conservation														.	.	.	.	.	.																												.
Alig confidence														.	.	.	.	.	.																												.
Template Conservation
Template Sequence		T	D	Q	W	T	M	R	A	G	V	A	Y	D	Q	T	P	T	H	N	A	T	R	D	P	R	I	P	D	G	D	R	Y	F	A	S	L	G	A	G	Y	R	F	Q	S	M	P	E	L	S	I	D	A
Template Known Secondary structure		S	S	S													S			T	T	T			S	S	S																	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions