Job Description P42591 Confidence 98.60% Date Thu Jan 5 12:01:37 GMT 2012 Rank 6 Aligned Residues 290 % Identity 12% Template c3a2rX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis Resolution 2.30 Å

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		50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.									.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure										.																																							.	.	.	.	.	.	.	.
Query SS confidence										.																																							.	.	.	.	.	.	.	.
Query Sequence		F	Y	G	E	L	G	V	G	.	G	Y	M	D	L	E	G	E	N	K	H	K	Y	S	D	G	T	Y	I	E	G	G	L	E	M	K	Y	G	S	W	F	G	L	I	Y	G	E	G	.	.	.	.	.	.	.	.	W	T	V	Q	A	D	H	D	G	N	A	W	V	P	D	H	S	W	G	G	F	E	G	G	I
Query Conservation										.																																							.	.	.	.	.	.	.	.
Alig confidence										.																																							.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.
Template Sequence		L	Y	G	T	I	K	A	G	V	E	V	S	R	V	K	D	A	G	T	Y	K	A	Q	G	G	K	S	K	T	A	T	Q	I	A	D	F	G	S	K	I	G	F	K	G	Q	E	D	L	G	N	G	M	K	A	I	W	Q	L	E	Q	K	A	.	.	.	.	.	.	.	S	I	A	G	T	N	S	G	W	G	N
Template Known Secondary structure																		T	T	T			S	G	G	G	B																							S	S	S												.	.	.	.	.	.	.		T	T	S					S	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.								.	.	.	.	70	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.									.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.											.
Query SS confidence																																																.	.	.	.	.	.	.	.											.
Query Sequence		N	R	F	Y	G	G	Y	R	T	N	D	G	T	E	I	M	L	S	L	R	Q	D	S	S	L	D	D	L	Q	W	W	G	D	F	T	P	D	L	G	Y	V	I	P	N	T	R	.	.	.	.	.	.	.	.	D	I	M	T	A	L	K	V	Q	N	.	L	S	G	N	F	R	Y	S	V	T	A	T	P	A	G
Query Conservation																																																.	.	.	.	.	.	.	.											.
Alig confidence															.					.																												.	.	.	.	.	.	.	.											.
Template Conservation															.					.
Template Sequence		R	Q	S	F	I	G	L	K	G	G	F	G	T	.	V	R	A	G	.	N	L	N	T	V	L	K	D	S	G	D	N	V	N	A	W	E	S	G	S	N	T	E	D	V	L	G	L	G	T	I	G	R	V	E	S	R	E	I	S	V	R	Y	D	S	P	V	F	A	G	F	S	G	S	V	Q	Y	V	P	R	D
Template Known Secondary structure		S	S								T	T			.					.										G	G	G	T							G	G	G	T	T	T	T	S						T	T														B	T	T
Template Predicted Secondary structure															.					.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		192	.	.	.	.								.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.												.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	H	D	E	S	.	.	.	.	.	.	.	K	A	W	L	H	F	G	K	Y	D	R	Y	D	D	K	Y	T	Y	P	A	M	M	N	G	Y	I	Q	.	.	.	.	.	.	.	.	.	.	.	Y	D	L	A	E	G	I	T	W	M	N	G	L	E	I	T	D	G	T	G	Q	L	Y	L	T	G	L	L	T	P
Query Conservation							.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		N	A	N	D	V	D	K	Y	K	H	T	K	S	S	R	E	S	Y	H	A	G	L	K	Y	E	N	A	G	F	F	G	Q	Y	A	G	S	F	A	K	Y	A	D	L	N	T	D	A	E	R	V	A	V	N	T	A	N	A	H	P	V	K	D	Y	Q	V	H	R	V	V	A	G	Y	D	A	N	D	L	.	.	.
Template Known Secondary structure					S	T	T	S	S	S	T	T	S															T	T																	T	T	S		B			T	T		T	T																			T	T		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300				.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.																											.	.	.
Query SS confidence																							.	.	.	.																											.	.	.
Query Sequence		N	F	A	A	R	A	W	H	H	T	G	R	A	D	G	L	D	V	P	G	S	.	.	.	.	E	S	G	M	M	V	S	A	M	Y	E	A	L	K	G	V	Y	L	S	T	A	Y	T	Y	A	K	.	.	.	H	R	P	D	H	A	D	D	E	T	T	S	F	M	Q	F	G	I	W	Y	E	Y	G	G	G	R
Query Conservation																							.	.	.	.																											.	.	.
Alig confidence																							.	.	.	.													.														.	.	.
Template Conservation																																							.
Template Sequence		Y	V	S	V	A	G	Q	Y	E	A	A	K	N	N	E	V	G	S	I	K	G	K	K	H	E	Q	T	Q	V	A	A	T	A	A	Y	R	F	.	G	N	V	T	P	R	V	S	Y	A	H	G	F	K	A	K	V	N	G	V	K	D	A	N	Y	Q	Y	D	Q	V	I	V	G	A	D	Y	D	F	S	K	R	T
Template Known Secondary structure																S	S	S	T	T	T	T																B	.	T	T																T	T				G	G	G													S	S	S	S
Template Predicted Secondary structure																																							.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	T	A	F	D	S	R	F	Y	M	K	N	A	S	H	D	P	S	D	Q	I	F	L	M	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	L	V	S	A	G	W	L	K	Q	G	K	G	A	G	K	V	E	Q	T	A	S	M	V	G
Template Known Secondary structure													S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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