Job Description P42591 Confidence 8.85% Date Thu Jan 5 12:01:37 GMT 2012 Rank 28 Aligned Residues 81 % Identity 15% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.					.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.
Query SS confidence																																																																									.	.	.	.
Query Sequence		N	G	L	E	I	T	D	G	T	G	Q	L	Y	L	T	G	L	L	T	P	N	F	A	A	R	A	W	H	H	T	G	R	A	D	G	L	D	V	P	G	S	E	S	G	M	M	V	S	A	M	Y	E	A	L	K	G	V	Y	L	S	T	A	Y	T	Y	A	K	H	R	P	D	.	.	.	.	H	A	D	D	E
Query Conservation																																																																									.	.	.	.
Alig confidence																		.	.													.	.	.	.	.	.																																				.	.	.	.
Template Conservation																		.	.													.	.	.	.	.	.
Template Sequence		I	N	D	V	Q	V	E	V	N	Y	A	I	K	L	D	D	.	.	Q	W	T	V	R	P	G	M	L	T	H	F	.	.	.	.	.	.	S	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S
Template Known Secondary structure															S	S	S	.	.	S												.	.	.	.	.	.		T	T															S	S	S													S	S					T	T	S
Template Predicted Secondary structure																		.	.													.	.	.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	S	F	M	Q	F	G	I	W	Y	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	N	V	H	R	W	D	G	Y	V	T	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions