Job Description P64588 Confidence 71.43% Date Thu Jan 5 12:09:41 GMT 2012 Rank 171 Aligned Residues 114 % Identity 17% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	G	G	R	R	Q	R	F	F	G	H	G	E	L	R	L	V	I	L	D	I	L	S	R	D	D	S	H	G	Y	E	L	I	K	A	I	E	N	L	T	Q	G	N	Y	T	P	S	P	G	V	I	Y	P	T	L	D	F	L	Q	E	Q	S	L	I	T	I	R	E	E	E	G	G	K	K	Q	I	A	L	T
Query Conservation
Alig confidence														.														.											.	.	.	.	.	.	.	.																																.
Template Conservation														.														.											.	.	.	.	.	.	.	.																																.
Template Sequence		G	G	V	F	V	N	G	R	P	L	P	D	.	S	T	R	Q	R	I	V	E	L	A	H	S	G	.	A	R	P	C	D	I	S	R	I	L	.	.	.	.	.	.	.	.	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	G	G	S	K	P	R	.	V	A	T
Template Known Secondary structure		S					T	T	S					.												T	T	.											.	.	.	.	.	.	.	.	T																	S			S					S					S	.	S	S
Template Predicted Secondary structure														.														.											.	.	.	.	.	.	.	.																																.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.						.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure															.	.	.	.	.														.	.
Query SS confidence															.	.	.	.	.														.	.
Query Sequence		E	Q	G	A	Q	W	L	E	E	N	R	E	Q	.	.	.	.	.	V	E	M	I	E	E	R	I	K	A	R	C	V	.	.	G	A	A	L	R	Q	N	P	Q	M	K	R	A	L	D	N	F	K	A
Query Conservation															.	.	.	.	.														.	.
Alig confidence															.	.	.	.	.														.	.
Template Conservation
Template Sequence		P	E	V	V	S	K	I	A	Q	Y	K	Q	E	C	P	S	I	F	A	W	E	I	R	D	R	L	L	S	E	G	V	C	T	N	D	N	I	P	S	V	S	S	I	N	R	V	L	R	N	L	A	S
Template Known Secondary structure																T	T													T	T	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions