Job Description P64588 Confidence 97.34% Date Thu Jan 5 12:09:41 GMT 2012 Rank 80 Aligned Residues 120 % Identity 17% Template c2rkhA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative apha-like transcription factor; PDBTitle: crystal structure of a putative apha-like transcription factor2 (zp_00208345.1) from magnetospirillum magnetotacticum ms-1 at 2.00 a3 resolution Resolution 2.00 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	L	V	I	L	D	I	L	S	R	D	D	S	H	G	Y	E	L	I	K	A	I	E	N	L	T	Q	G	N	Y	T	P	S	P	G	V	I	Y	P	T	L	D	F	L	Q	E	Q	S	L	I	T	I	R	E	E	E	G	G	K	K	Q	I	A	L	T	E	Q	G	A	Q	W	L	E	E	N	R	E	Q	V
Query Conservation
Alig confidence																																																										.	.	.	.	.															.	.	.	.	.
Template Conservation																																																										.	.	.	.	.															.	.	.	.	.
Template Sequence		V	R	L	C	A	L	G	T	I	A	S	Q	P	X	R	Y	S	E	L	A	G	S	V	R	H	F	T	S	R	I	X	G	P	S	L	E	L	X	G	I	S	I	E	L	L	R	Y	E	G	L	V	E	A	V	D	A	.	.	.	.	.	X	L	A	I	S	A	A	G	R	R	E	L	H	S	.	.	.	.	.
Template Known Secondary structure													S																				S			G	G	G	T	T			T						T	T	S							.	.	.	.	.															.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.															.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	I	E	E	R	I	K	A	R	C	V	G	A	A	L	R	Q	N	P	Q	M	K	R	A	L	D	N	F	K	A	V	L	D	L	R	V	N	Q	S	D	I	S	D	A	Q	I	K	K	I	I	A	V	I	D	R	A	A	F	D	I	T	Q	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	L	L	T	A	R	L	R	P	G	.	.	.	S	D	L	S	K	L	V	V	A	L	K	X	R	F	L	G	L	X	E	A	E	E	R	A	H	Q	I	D	L	L	I	E	G	V	D	S	E	L	A	R	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.			S					S	S	.	.	.	S		T											T	G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template SS confidence
													91	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions