Job Description P64588 Confidence 97.95% Date Thu Jan 5 12:09:41 GMT 2012 Rank 38 Aligned Residues 127 % Identity 9% Template c1p4xA_ PDB info PDB header:transcription Chain: A: PDB Molecule:staphylococcal accessory regulator a homologue; PDBTitle: crystal structure of sars protein from staphylococcus aureus Resolution 2.20 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		R	L	V	I	L	D	I	L	S	R	D	D	S	H	G	Y	E	L	I	K	A	I	E	N	L	T	Q	G	N	Y	T	P	S	P	G	V	I	Y	P	T	L	D	F	L	Q	E	Q	S	L	I	T	I	R	E	E	E	G	G	K	K	.	.	Q	I	A	L	T	E	Q	G	A	Q	W	L	E	E	N	R	E	Q
Query Conservation																																																														.	.
Alig confidence																											.	.	.	.	.																															.	.
Template Conservation																											.	.	.	.	.
Template Sequence		E	F	I	L	L	T	Y	L	F	H	Q	Q	E	N	T	L	P	F	K	K	I	V	S	D	L	.	.	.	.	.	C	Y	K	Q	S	D	L	V	Q	H	I	K	V	L	V	K	H	S	Y	I	S	K	V	R	S	K	I	D	E	R	N	T	Y	I	S	I	S	E	E	Q	R	E	K	I	A	E	R	V	T	L
Template Known Secondary structure											S		S		S											S	.	.	.	.	.	S	S		G	G	G	T										T	T	S							S	S	S	T	T	S
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		V	E	M	I	E	E	R	I	K	A	R	C	V	G	A	A	L	R	.	.	.	Q	N	P	Q	M	K	R	A	L	D	N	F	K	A	V	L	D	L	R	V	N	Q	S	D	I	S	D	A	Q	I	K	K	I	I	A	V
Query Conservation																				.	.	.
Alig confidence																				.	.	.
Template Conservation
Template Sequence		F	D	Q	I	I	K	Q	F	N	L	A	D	Q	S	E	S	Q	M	I	P	K	D	S	K	E	F	L	N	L	M	M	Y	T	M	Y	F	K	N	I	I	K	K	H	L	T	L	S	F	V	E	F	T	I	L	A	I	I
Template Known Secondary structure													T	T			S	S		S			S																							S	S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions