Job Description P77634 Confidence 46.44% Date Thu Jan 5 12:31:19 GMT 2012 Rank 452 Aligned Residues 158 % Identity 11% Template c3kccA_ PDB info PDB header:transcription Chain: A: PDB Molecule:catabolite gene activator; PDBTitle: crystal structure of d138l mutant of catabolite gene activator protein Resolution 1.66 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		K	V	I	N	W	E	T	H	T	L	T	V	D	N	N	Q	.	.	.	.	I	I	L	F	P	C	G	Y	E	F	Y	I	E	N	Y	P	E	A	G	L	Y	L	A	E	M	L	Y	L	P	I	D	L	I	E	S	F	Q	K	L	Y	T	V	T	D	Q	I	R	N	K	T	S	F	F	L	P	Q	N	P	E	L
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.																												.	.	.	.
Template Conservation																																																	.	.	.	.
Template Sequence		H	I	H	K	Y	P	S	K	S	T	L	I	H	Q	G	E	K	A	E	T	L	Y	Y	I	V	K	G	S	V	A	V	L	I	K	D	E	E	G	K	E	M	I	L	S	Y	L	N	.	.	.	.	Q	G	D	F	I	G	E	L	G	L	F	E	E	G	Q	E	R	S	A	W	V	R	A	K	T	A	C	E	V
Template Known Secondary structure								T	T						T	T		B																			T	T											.	.	.	.	T	T				S		T	T	T	T	S	T	T		B			S					S	S
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.										.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.
Query Sequence		I	Y	C	W	E	Q	L	K	T	S	V	S	R	G	F	S	T	K	I	Q	E	H	L	A	M	G	V	L	L	S	L	G	V	N	H	V	N	H	L	L	L	S	Y	S	K	Q	S	L	I	S	R	C	Y	N	L	L	L	S	E	P	G	T	.	.	.	.	.	.	.	.	.	K	W	T	A	N	K	V	A	R
Query Conservation																																																																.	.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	I	S	Y	K	K	F	R	Q	L	I	Q	V	N	P	D	I	L	M	R	L	S	A	Q	M	A	R	R	L	Q	V	T	S	E	K	V	G	N	L	A	F	L	L	V	T	G	R	I	A	Q	T	L	L	N	L	A	K	Q	P	D	A	M	T	H	P	D	G	M	Q	I	K	I	T	R	Q	E	I	G	Q
Template Known Secondary structure																	T																																										T	S	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	Y	I	S	V	S	T	L	H	R	R	L	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	G	C	S	R	E	T	V	G	R	I	L	K	M
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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