Job Description B8LFD5 Confidence 100.00% Date Thu Jan 5 10:55:39 GMT 2012 Rank 10 Aligned Residues 271 % Identity 22% Template d2nzug1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.50

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	S	L	L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A
Query Conservation
Alig confidence																																											.
Template Conservation																																											.
Template Sequence		K	K	T	T	T	V	G	V	I	I	P	D	I	S	N	I	F	Y	A	E	L	A	R	G	I	E	D	I	A	T	M	Y	K	Y	N	I	I	L	S	N	S	.	D	Q	N	Q	D	K	E	L	H	L	L	N	N	M	L	G	K	Q	V	D	G	I	I	F	M	S	G	N	V	T	E	E	H	V	E	E	L	K
Template Known Secondary structure					S							S		T	T	S																	T	T									.	T	T														T	T			S							S
Template Predicted Secondary structure																																											.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.
Predicted Secondary structure																																																												.																			.	.
Query SS confidence																																																												.																			.	.
Query Sequence		A	C	T	N	V	P	A	L	F	L	D	V	S	D	Q	T	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	Q	Q	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	.	R	L	A	G	W	H	K	Y	L	T	R	N	Q	I	Q	P	I	A	.	.	E
Query Conservation																																																												.																			.	.
Alig confidence																																																												.																			.	.
Template Conservation
Template Sequence		K	S	P	V	P	V	V	L	A	A	S	I	E	S	T	N	Q	I	P	S	V	T	I	D	Y	E	Q	A	A	F	D	A	V	Q	S	L	I	D	S	G	H	K	N	I	A	F	V	S	G	T	L	E	E	P	I	N	H	A	K	K	V	K	G	Y	K	R	A	L	T	E	S	G	L	P	V	R	D	S	Y	I
Template Known Secondary structure				S	S						S				T	T			S																					T	T		S							S		T	T	S					T	T												T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	G	D	W	S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	S	T	T	I	K	Q	D	F	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	G	D	Y	T	Y	D	S	G	I	E	A	V	E	K	L	L	E	E	D	E	K	P	T	A	I	F	V	G	T	D	E	M	A	L	G	V	I	H	G	A	Q	D	R	G	L	N	V	P	N	D	L	E	I	I	G	F	D	N	T	R	L	S	T	M	V	R	P	Q	L	T	S	V	V	Q	P	M	Y	D
Template Known Secondary structure						S	S													T	S	S	S			S					S	S													T	T	T			T	T	T	T										G	G	G	G	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		L	G	Q	T	S	V	D	R	L	L	Q	L	S	Q	G	Q	A	V	K	.	G	N	Q	L	L	P	V	S	L	V	K	R	K	T	T	L
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		I	G	A	V	A	M	R	L	L	T	K	Y	M	N	K	E	T	V	D	S	S	I	V	Q	L	P	H	R	I	E	F	R	Q	S	T	K
Template Known Secondary structure															T	T				S		S												S	S
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions