Return to main results Retrieve Phyre Job Id

Job DescriptionB8LFD5
Confidence77.98%DateThu Jan 5 10:55:39 GMT 2012
Rank500Aligned Residues28
% Identity14%Templatec3t72o_
PDB info PDB header:transcription/dnaChain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
Resolution4.33 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20........
Predicted Secondary structure 











Query SS confidence 



























Query Sequence  MVNVKPVTLYDVAEYAGVSYQTVSRVVN
Query Conservation 
   

 

 


  



  






Alig confidence 



























Template Conservation 
      

 


  










  
Template Sequence  IDMNTDYTLEEVGKQFDVTRERIRQIEA
Template Known Secondary structure  SSS
S


SS
Template Predicted Secondary structure 










Template SS confidence 



























   565....570.........580.........590..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions