Job Description B8LFD5 Confidence 99.98% Date Thu Jan 5 10:55:39 GMT 2012 Rank 24 Aligned Residues 262 % Identity 22% Template c3hs3A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:ribose operon repressor; PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus Resolution 1.60 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	S	L	L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A
Query Conservation
Alig confidence																																																																												.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence		K	K	S	K	M	I	G	I	I	I	P	D	L	N	N	R	F	Y	A	Q	I	I	D	G	I	Q	E	V	I	Q	K	E	G	Y	T	A	L	I	S	F	S	T	N	S	D	V	K	K	Y	Q	N	A	I	I	N	F	E	N	N	N	V	D	G	I	I	T	S	A	F	T	I	P	P	N	.	.	.	.	.	F
Template Known Secondary structure												S		T	T	S																	T	T									S	S																T	T		S											T	T	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	T	N	V	P	A	L	F	L	D	V	S	D	Q	T	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	Q	Q	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	Q	I	Q	P	I	A	E	R	E	G
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		H	L	N	T	P	L	V	M	Y	D	S	A	N	I	N	D	D	I	V	R	I	V	S	N	N	T	K	G	G	K	E	S	I	K	L	.	L	S	K	K	I	E	K	V	L	I	Q	H	W	P	L	S	L	P	T	I	R	E	R	I	E	A	M	T	A	E	A	S	K	L	K	I	D	Y	L	L	E	E	T	P
Template Known Secondary structure				S	S						S						S	S	S																	T	.	S		T	T									S		T	T	S																	T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	W	S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	S	T	T	I	K	Q	D	F	R	L	L	G	Q
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		E	N	N	.	.	.	P	Y	I	S	A	Q	S	A	L	N	K	S	N	Q	F	D	A	I	I	T	V	N	D	L	Y	A	A	E	I	I	K	E	A	K	R	R	N	L	K	I	P	D	D	F	Q	L	V	G	Y	D	N	N	I	L	C	G	Y	T	S	P	T	I	S	T	I	D	Q	N	P	K	L	I	G	Q
Template Known Secondary structure		S	S		.	.	.											T	G	G	G		S					S	S														T	T			T	T	T	T						S	B			G	G	G	G	T	S	S	S			B
Template Predicted Secondary structure					.	.	.
Template SS confidence
		211	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	V	D	R	L	L	Q	L	S	Q	G	Q	A	V	K	G	N	Q	L	L	P	V	S	L	V	K	R	K	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	A	H	R	L	L	D	L	M	S	G	N	N	S	T	R	N	S	I	I	D	V	L	P	I	K	R	D	S	T
Template Known Secondary structure											T	T	T
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions