Job Description B8LFD5 Confidence 100.00% Date Thu Jan 5 10:55:39 GMT 2012 Rank 4 Aligned Residues 318 % Identity 19% Template c3h5tA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum Resolution 2.53 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	P	V	T	L	Y	D	V	A	E	Y	A	G	V	S	Y	Q	T	V	S	R	V	V	N	Q	A	S	H	V	S	A	K	T	R	E	K	V	E	A	A	M	A	E	L	N	Y	I	P	N	R	V	A	Q	Q	L	A	G	K	Q	S	L	L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V
Query Conservation
Alig confidence																																																				.	.	.	.	.															.	.	.
Template Conservation																																																				.	.	.	.	.															.	.	.
Template Sequence		Q	Q	Y	G	T	L	A	S	I	A	A	K	L	G	I	S	R	T	T	V	S	N	A	Y	N	R	P	E	Q	L	S	A	E	L	R	Q	R	I	L	D	T	A	E	D	M	G	Y	A	G	A	.	.	.	.	.	I	G	V	L	L	T	E	D	L	T	Y	A	F	E	.	.	.	D	M	A	S	V	D	F	L
Template Known Secondary structure				T	T										T	S												G	G	G	S															T	T					.	.	.	.	.						S	S		T	T					.	.	.	S
Template Predicted Secondary structure																																																				.	.	.	.	.															.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A	A	C	T	N	V	P	A	L	F	L	D	V	S	D	Q	T	P	I	N	S	I	I
Query Conservation
Alig confidence																					.	.
Template Conservation																					.	.
Template Sequence		A	G	V	A	Q	A	A	G	D	T	Q	L	T	L	I	P	A	S	P	.	.	A	S	S	V	D	H	V	S	A	Q	Q	L	V	N	N	A	A	V	D	G	V	V	I	Y	S	V	A	K	G	D	P	H	I	D	A	I	R	A	R	G	L	P	A	V	I	A	D	Q	P	A	R	E	E	G	M	P	F	I	A
Template Known Secondary structure								S	S	S											.	.		T	T												T				S						S			T	T											T							S	S			S		T	T
Template Predicted Secondary structure																					.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.																		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Query Sequence		F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	Q	Q	I	A	L	L	A	G	P	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	Q	I	Q	P	.	.	.	I	A	E	R	E	G	D	W
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation
Template Sequence		P	N	N	R	K	A	I	A	P	A	A	Q	A	L	I	D	A	G	H	R	K	I	G	I	L	S	I	R	L	D	R	A	N	N	D	G	E	V	T	R	E	R	L	E	N	A	Q	Y	Q	V	Q	R	D	R	V	R	G	A	M	E	V	F	I	E	A	G	I	D	P	G	T	V	P	I	M	E	C	W	I	N
Template Known Secondary structure								T										T	T			S									S	S	S													T				T	T																T			G	G	G	S						S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	S	T	T	I	K	Q	D	F	R	L	L	G	Q	T	S
Query Conservation
Alig confidence																																																															.	.
Template Conservation																																																															.	.
Template Sequence		N	R	Q	H	N	F	E	V	A	K	E	L	L	E	T	H	P	D	L	T	A	V	L	C	T	V	D	A	L	A	F	G	V	L	E	Y	L	K	S	V	G	K	S	A	P	A	D	L	S	L	T	G	F	D	G	T	H	M	A	L	A	.	.	R	D	L	T	T	V	I	Q	P	N	K	L	K	G	F	K	A
Template Known Secondary structure																		T	T							S	S														T	T			T	T	T	T															.	.	T	T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	R	L	L	Q	L	S	Q	G	Q	A	V	K	G	N	Q	L	L	P	V	S	L	V	K	R	K	T	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	T	L	L	K	M	I	D	K	E	Y	V	E	P	E	V	E	L	E	T	S	F	H	P	G	S	T	V	A
Template Known Secondary structure										T	T					S												S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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