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Job DescriptionB8LFD5
Confidence99.96%DateThu Jan 5 10:55:39 GMT 2012
Rank39Aligned Residues244
% Identity25%Templatec3gybB_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90.........100.........110.........120.........130.........140...
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Query Sequence  SLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAAC
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Template Sequence  TQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGT. . DPITSALSXRPDGIIIAQDIP. . . . . . . . . . .
Template Known Secondary structure 

S
TTSGGGGGGT

SSSS
SSS..
TT

S
SSS...........
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   63......70.........80.........90.........100........ .110.........120.........
 
   144.....150.........160.........170.........180.........190.........200.........210.........220 ..
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Query Sequence  TNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAERE. GD
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Template Sequence  . . . . . . . DFTVPDSLPDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGS. . GAGLRRFESFEATXRAHGLEPLSNDYLGP
Template Known Secondary structure  .......SS


B






TT

S

SS..TT






S
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   130.........140.........150.........160.........170. ........180.........190.........200
 
   223......230.........240.........250.........260.........270.........280.........290.........300..
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Query Sequence  WSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPSTTIKQDFRLLGQT
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Template Sequence  AVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYDNTPLAQTRLINLTTIDDNSIGVGYN
Template Known Secondary structure 


TT

SST

TTTT
S

STTT




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   216...220.........230.........240.........250.........260.........270.........280.........290.....
 
   303......310.........320.........330....
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Query Sequence  SVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLA
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Template Sequence  AALLLLSXLEIXH. . . . . TLQPSLIERGTCAP
Template Known Secondary structure 



S.....



SS


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   296...300........ .310.........320..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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