Job Description B8LFD5 Confidence 99.90% Date Thu Jan 5 10:55:39 GMT 2012 Rank 55 Aligned Residues 233 % Identity 19% Template c3e61A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus Resolution 2.00 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A	A	C	T	N
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		L	I	G	L	L	L	P	D	M	S	N	P	F	F	T	L	I	A	R	G	V	E	D	V	A	L	A	H	G	Y	Q	V	L	I	G	N	S	D	N	.	D	I	K	K	A	Q	G	Y	L	A	T	F	V	S	H	N	C	T	G	M	I	S	T	A	F	N	E	N	I	I	E	N	T	L	T	D	H	I	P	F
Template Known Secondary structure								S		T	T	S																	T	T									T	T	.															T	T		S						G	G	G
Template Predicted Secondary structure																																									.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	A	L	F	L	D	V	S	D	Q	T	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	Q	Q	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	Q	I	Q	P	I	A	E	R	E	G	D	W	S	A
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.
Template Sequence		V	F	I	D	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	N	H	F	K	G	G	Q	L	Q	A	E	V	V	R	K	G	K	G	K	N	V	L	I	V	H	E	N	L	L	I	D	A	F	H	Q	R	V	Q	G	I	K	Y	I	L	D	Q	D	Y	K	M	L	E	A	T	L	L	D	N	.	.	.
Template Known Secondary structure				G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.																T	T			S						S		T	T	S																							G	G	G	G	G	S	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.
Template SS confidence
		141	.	.	.	.	.														.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	S	T	T	I	K	Q	D	F	R	L	L	G	Q	T	S	V	D
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	D	K	K	F	I	D	L	I	K	E	L	S	I	D	S	I	I	C	S	N	D	L	L	A	I	N	V	L	G	I	V	Q	R	Y	H	F	K	V	P	A	E	I	Q	I	I	G	Y	D	N	I	P	F	S	E	M	T	Y	P	Q	I	T	T	I	D	Q	S	A	Y	H	L	G	E	I	A	V	S
Template Known Secondary structure		.	.	.	.												T							S	S														T	T			T	T	T	T						S	B			G	G	G	G	T	S	S	S			B
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	L	Q	L	S	Q	G	Q	A	V	K	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	L	A	L	T	V	K	H	R	G	S	T	R
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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