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Job DescriptionB8LFD5
Confidence99.82%DateThu Jan 5 10:55:39 GMT 2012
Rank65Aligned Residues257
% Identity14%Templatec3d02A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  LLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACT
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Template Sequence  KTVVNISKVDGXPWFNRXGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARD
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   2930.........40.........50.........60.........70.........80.........90.........100........
 
   145....150......... 160.........170......... 180.........190.........200.........210.........
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Query Sequence  NVPALFLDVSDQTPI. . . NSIIFSHEDGTRLGVEHLVA. . LGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAER
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Template Sequence  AGIVVLTNESPGQPSANWDVEIIDNEKFAAEYVEHXAKRXGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDXHEVT
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   109110.........120.........130.........140.........150.........160.........170.........180........
 
   220.........230.........240.........250.........260.........270.........280..... ....290...
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Query Sequence  . . . EGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCY. . . IPPSTTIK
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Template Sequence  RRXPVAESVDDSRRTTLDLXKTYPDLKAVVSFGSNGPIGAGRAVKEKRAK. . NKVAVYGXXIPSQAASLIKSGDITEGIT
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   189190.........200.........210.........220.........230........ .240.........250.........260......
 
   294.....300.........310.........320...
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Query Sequence  QDFRLLGQTSVDRLLQLSQGQAVKGNQLLP
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Template Sequence  YDPATAGYALAAVASTLLNGKTIEPGFELK
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   267..270.........280.........290......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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