Job Description B8LFD5 Confidence 99.89% Date Thu Jan 5 10:55:39 GMT 2012 Rank 57 Aligned Residues 264 % Identity 16% Template c2qvcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima Resolution 2.40 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A	A	C	T	N
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		T	I	G	V	I	.	G	K	S	V	H	P	Y	W	S	Q	V	E	Q	G	V	K	A	A	G	K	A	L	G	V	D	T	K	F	F	V	P	Q	K	E	D	I	N	A	Q	L	Q	X	L	E	S	F	I	A	E	G	V	N	G	I	A	I	A	P	S	D	P	T	A	V	I	P	T	I	K	K	A	L	E	X
Template Known Secondary structure							.		S		S	S																		T									S	S																T	T		S							S	S	T	T	T	T										T
Template Predicted Secondary structure							.
Template SS confidence
		33	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		V	P	A	L	F	L	D	V	S	D	Q	T	P	I	N	S	I	I	F	.	.	.	.	.	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	Q	Q	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	Q	I	Q	P	I	A	E	R	E
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.
Template Conservation
Template Sequence		G	I	P	V	V	T	L	D	T	D	S	P	D	S	G	R	Y	V	Y	I	G	T	D	N	Y	Q	A	G	Y	T	A	G	L	I	X	K	E	L	L	G	G	K	G	K	V	V	I	G	T	G	S	L	T	A	X	N	S	L	Q	R	I	Q	G	F	K	D	A	I	K	D	S	E	I	E	I	V	D	I	L	N
Template Known Secondary structure		T							S	S			T	T	S			S																						T	T	T									S		S	S	S													T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		G	D	W	S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	.	.	.	S	T	T	I	K	Q	D	F	R
Query Conservation																																																																						.	.	.
Alig confidence																																														.	.																							.	.	.
Template Conservation																																														.	.
Template Sequence		D	E	E	D	G	A	R	A	V	S	L	A	E	A	A	L	N	A	H	P	D	L	D	A	F	F	G	V	Y	A	Y	N	G	P	A	Q	A	L	V	V	K	N	A	G	.	.	K	V	G	K	V	K	I	V	C	F	D	T	T	P	D	I	L	Q	Y	V	K	E	G	V	I	Q	A	T	X	G	Q	R	P	Y
Template Known Secondary structure			T	T																	T	T							S	S	T	T												T	T	.	.		T	T	T	S																	T	T	S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.																.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	G	Q	T	S	V	D	R	L	L	Q	L	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	A	V	K	G	N	Q	L	L	P	V	S	L	V	K	R	K	T	T
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	X	G	Y	L	S	V	T	V	L	Y	L	X	N	K	I	G	V	Q	N	T	L	X	X	L	P	K	V	K	V	D	G	K	V	D	Y	V	I	D	T	G	V	D	V	V	T	P	E	N	L
Template Known Secondary structure																	T								T	S						T	T															T	T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions