Job Description B8LFD5 Confidence 99.96% Date Thu Jan 5 10:55:39 GMT 2012 Rank 38 Aligned Residues 269 % Identity 19% Template c2ioyB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein Resolution 1.90 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A	A	C	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	I	G	L	V	I	S	T	L	N	N	P	F	F	V	T	L	K	N	G	A	E	E	K	A	K	E	L	G	Y	K	I	I	V	E	D	S	Q	N	D	S	S	K	E	L	S	N	V	E	D	L	I	Q	Q	K	V	D	V	L	L	I	N	P	V	D	S	D	A	V	V	T	A	I	K	E	A	N	S	K
Template Known Secondary structure									S		S	S	S																		T									T	T															T	T		S							S	S	T	T	T											T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		145	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.
Predicted Secondary structure															.	.																										.	.																																				.
Query SS confidence															.	.																										.	.																																				.
Query Sequence		N	V	P	A	L	F	L	D	V	S	D	Q	T	.	.	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	.	.	Q	Q	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	Q	I	Q	P	I	A	.	E	R
Query Conservation															.	.																										.	.																																				.
Alig confidence															.	.																										.	.																																				.
Template Conservation
Template Sequence		N	I	P	V	I	T	I	D	R	S	A	N	G	G	D	V	V	C	H	I	A	S	D	N	V	K	G	G	E	M	A	A	E	F	I	A	K	A	L	K	G	K	G	N	V	V	E	L	E	G	I	P	G	A	S	A	A	R	D	R	G	K	G	F	D	E	A	I	A	K	Y	P	D	I	K	I	V	A	K	Q
Template Known Secondary structure		T							S	S			S	S	S			S																						T	T	T											T	T																T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	D	W	S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	S	T	T	I	K	Q	D	F	R	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	D	F	D	R	S	K	G	L	S	V	M	E	N	I	L	Q	A	Q	P	K	I	D	A	V	F	A	Q	N	D	E	M	A	L	G	A	I	K	A	I	E	A	A	N	R	Q	G	I	I	V	V	G	F	D	G	T	E	D	A	L	K	A	I	K	E	G	K	M	A	A	T	I	A	Q	Q	P	A	L	M
Template Known Secondary structure				T	T																	S								S	S														T	T		T	T																			T	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	T	S	V	D	R	L	L	Q	L	S	Q	G	Q	A	V	K	G	N	Q	L	L	P	V	S	L	V	K	R	K	T	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	L	G	V	E	M	A	D	K	Y	L	K	G	E	K	I	P	N	F	I	P	A	E	L	K	L	I	T	K	E	N	V	Q
Template Known Secondary structure														T	T					S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions