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Job DescriptionB8LFD5
Confidence99.48%DateThu Jan 5 10:55:39 GMT 2012
Rank78Aligned Residues278
% Identity11%Templatec2hqbA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   65....70.........80.........90.........100.........110.........120.........130.........140....
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Query Sequence  LLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACT
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Template Sequence  GXVGLLVE. . DTGWNRKAYEGLLNIHSNLDVDVVLEEGVN. SEQKAHRRIKELVDGGVNLIFGHGHAFAEYFSTIHNQYP
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   0....... ..10.........20.........30....... ..40.........50.........60.........70......
 
   145....150. ........160.........170.........180.........190.........200.........210.........220...
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Query Sequence  NVPALFL. DVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDW
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Template Sequence  DVHFVSFNGEVKGENITSLHFEGYAXGYFGGXVAASXSETHKVGVIAAFPWQ. . . PEVEGFVDGAKYXNESEAFVRYVGE
Template Known Secondary structure  TSS



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   81........90.........100.........110.........120.........130.. .......140.........150.......
 
   224.....230.........240.........250.........260.........270.........280.........290.........300...
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Query Sequence  SAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPSTTIKQDFRLLGQTS
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Template Sequence  WTDADKALELFQELQKEQVDVFYPAGDGYHVPVVEAIKDQGDF. . . . . . AIGYVGDQADLGGSTILTSTVQHVDDLYVLV
Template Known Secondary structure  SS
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   158.160.........170.........180.........190.........200 .........210.........220.........230.
 
   304.....310.........320.........330.........340.........350...... ...360...
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Query Sequence  VDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPRALADSLMQLARQV. SRLESGQ
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Template Sequence  AK. . . RFQEGKLESGNLYYD. . . . . . FQDGVVSLGEFSSVVPDEVREQITDAISTYIQTGQ
Template Known Secondary structure  ...TTTT




......GGGTS



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   232. ......240........ .250.........260.........270.........280...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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