Job Description B8LFD5 Confidence 99.97% Date Thu Jan 5 10:55:39 GMT 2012 Rank 37 Aligned Residues 253 % Identity 20% Template c2h0aA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus Resolution 2.80 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A	A	C	T	N
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		T	V	S	V	L	L	P	F	V	A	T	E	F	Y	R	R	L	V	E	G	I	E	G	V	L	L	E	Q	R	Y	D	L	A	L	F	P	I	L	S	L	A	R	.	.	.	.	.	.	.	.	.	.	L	K	Y	L	T	D	G	L	I	L	A	S	Y	D	L	T	R	L	.	.	.	.	.	.	.	.	P	T
Template Known Secondary structure										S																	G	G	G	T										S				.	.	.	.	.	.	.	.	.	.						S						S							.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.											.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.									.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.
Predicted Secondary structure																																										.	.																															.	.
Query SS confidence																																										.	.																															.	.
Query Sequence		V	P	A	L	F	L	D	V	S	D	Q	T	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	Q	Q	I	.	.	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	Q	I	Q	P	.	.	I	A	E	R	E	G
Query Conservation																																										.	.																															.	.
Alig confidence																																										.	.																															.	.
Template Conservation
Template Sequence		E	R	P	V	V	L	V	D	A	Q	N	P	R	Y	D	S	V	Y	L	D	N	R	L	G	G	R	L	A	G	A	Y	L	A	R	F	P	G	P	I	F	A	I	A	V	E	E	E	P	D	R	R	T	V	F	A	E	R	M	A	G	F	Q	E	A	L	K	E	A	G	R	P	F	S	P	D	R	L	Y	I	T
Template Known Secondary structure		S	S						S	S			T	T	S							S												T	T	S	S	S										S																					T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	W	S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	S	T	T	I	K	Q	D	F	R	L	L	G	Q
Query Conservation
Alig confidence																																																																	.	.
Template Conservation																																																																	.	.
Template Sequence		R	H	S	Q	E	G	G	R	L	A	L	R	H	F	L	E	K	A	S	P	P	L	N	V	F	A	G	A	D	Q	V	A	L	G	V	L	E	E	A	V	R	L	G	L	T	P	G	R	D	V	R	V	L	G	F	D	G	H	P	F	A	E	E	.	.	A	G	L	S	T	I	A	Q	P	V	E	A	M	G	A
Template Known Secondary structure			S	S													T	T			S	S						S	S													T	T	S		T	T	T	T	S							S			T					.	.		T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		T	S	V	D	R	L	L	Q	L	S	Q	G	Q	A	V	K	.	G	N	Q	L	L	P	V	S	L	V	K	R	K	T	T	L	A	P	N	T	Q
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		R	A	A	Q	L	L	L	E	R	M	R	G	Y	Q	G	P	P	R	E	V	R	F	E	P	V	L	V	E	R	A	S	T	G	T	P	P	A	A
Template Known Secondary structure												T	T			S	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions