Job Description P33919 Confidence 100.00% Date Thu Jan 5 11:52:45 GMT 2012 Rank 3 Aligned Residues 328 % Identity 16% Template c4a4zA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		I	F	T	L	R	P	Y	Q	Q	E	A	V	D	A	T	L	N	H	F	R	R	H	K	T	P	A	V	I	V	L	P	T	G	A	G	K	S	L	V	I	A	E	L	A	R	L	A	.	.	.	R	G	R	V	L	V	L	A	H	V	K	E	L	V	A	Q	N	H	A	K	Y	Q	A	L	G	L	E	A	D	I
Query Conservation																																																	.	.	.
Alig confidence																			.	.	.	.	.																										.	.	.
Template Conservation																			.	.	.	.	.
Template Sequence		P	F	E	L	D	T	F	Q	K	E	A	V	Y	H	L	E	Q	.	.	.	.	.	G	D	S	V	F	V	A	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	M	A	H	R	N	M	T	K	T	I	Y	T	S	P	I	K	A	L	S	N	Q	K	F	R	D	F	K	E	T	F	V	N	I	G	L
Template Known Secondary structure		S	S															T	.	.	.	.	.	T									T	T	S		S														T	T								S		G	G	G										T	T
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.						.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		F	A	A	G	L	K	R	K	E	S	H	G	K	V	V	F	G	S	V	Q	S	V	A	R	N	L	D	A	F	.	.	.	Q	G	E	F	S	L	L	I	V	D	E	C	H	R	I	G	D	D	E	E	S	Q	Y	Q	Q	I	L	T	H	L	T	K	V	N	P	H	L	R	L	L	G	L	T	A	T	P	F	R
Query Conservation																															.	.	.
Alig confidence					.																										.	.	.																										.	.
Template Conservation					.																																																						.	.
Template Sequence		I	T	G	.	D	V	Q	I	N	P	D	A	N	C	L	I	M	T	T	E	I	L	R	S	M	L	Y	R	G	A	D	L	I	R	D	V	E	F	V	I	F	D	E	V	H	Y	V	N	D	Q	D	R	G	V	V	W	E	.	.	E	V	I	I	M	L	P	Q	H	V	K	F	I	L	L	S	A	T	V	P	N
Template Known Secondary structure				S	.	S					T	T	S	S																T		S	G	G	G	G									T	T				T	T		T	T					.	.						S		T	T											T	T
Template Predicted Secondary structure					.																																																						.	.
Template SS confidence
		404	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.			460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	K	G	W	I	Y	Q	F	H	Y	H	G	M	V	R	G	D	E	K	A	L	F	R	D	C	I	Y	E	L	P	L	R	Y	M	I	K	H	G	Y	L	T	P	P	E	R	L	D	M	P	V	V	Q	Y	D	F	S	R	L	Q	A	Q	S	N	G	L	F	S	E	A	D	L	N	R	E	L	K	K	Q	Q
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Y	E	F	A	N	W	I	G	R	T	K	Q	K	N	I	Y	V	I	S	T	P	K	R	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	E	I	N	I	W	A	K	K	E	L	I	P	V	I	N	Q	N	S	E	F	L	E	A	N	F	R	K	H	K	E	I	L	N	D	G	P
Template Known Secondary structure														T									S	S		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T								T	T			B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.																	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	T	P	H	I	I	S	Q	I	M	E	F	A	A	T	R	K	G	V	M	I	F	A	A	T	V	E	H	A	K	E	I	V	G	L	L	P	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	K	T	W	P	E	I	V	N	Y	L	R	K	R	E	L	L	P	M	V	V	F	V	F	S	K	K	R	C	E	E	Y	A	D	W	L	E	G	I	N	F	C	N	N	K	E	K	S	Q	I	H	M	F	I	E	K	S	I	T	R	L	K	K	E	D	R	D	L	P	Q	I	L	K	T	R	S	L	L	E
Template Known Secondary structure			T	T												T	T			S						S											T	T	T	T																					T	T	S						T												T
Template Predicted Secondary structure
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
			276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.										330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure		.																																																							.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																							.	.	.	.	.	.	.	.	.
Query Sequence		.	D	A	A	L	I	T	G	D	T	P	G	A	E	R	D	V	L	I	E	N	F	K	A	Q	R	F	R	Y	L	V	N	V	A	V	L	T	T	G	F	D	A	P	H	V	D	L	I	A	I	L	R	P	T	E	.	.	.	.	.	.	.	.	.	S	V	S	L	Y	Q	Q	I	V	G	R	G	L	R	L	A
Query Conservation		.																																																							.	.	.	.	.	.	.	.	.
Alig confidence		.																																											.												.	.	.	.	.	.	.	.	.
Template Conservation																																													.
Template Sequence		R	G	I	A	V	H	H	G	G	L	L	P	I	V	K	E	L	I	E	I	L	F	S	K	G	F	I	K	V	L	F	A	T	E	T	F	A	M	G	L	N	L	P	.	T	R	T	V	I	F	S	S	I	R	K	H	D	G	N	G	L	R	E	L	T	P	G	E	F	T	Q	M	A	G	R	A	G	R	R	G
Template Known Secondary structure		T	T						T	T	S														T	T			S						T					S					.		S					S		S					T	T															G	G	G			T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.		.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	K	T	D	C	L	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	S	T	G	T	V	I	V
Template Known Secondary structure		T		S	S
Template Predicted Secondary structure
Template SS confidence
		769	770	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions