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Job DescriptionP33919
Confidence100.00%DateThu Jan 5 11:52:45 GMT 2012
Rank2Aligned Residues345
% Identity17%Templatec3l9oA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
Resolution3.39 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40........ .50.........60.........70........
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Query Sequence  IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA. . . RGRVLVLAHVKELVAQNHAKYQALGLEADI
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Template Sequence  PFTLDPFQDTAISCIDR. . . . . GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL
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   147..150.........160... ......170.........180.........190.........200.........210.........220.
 
   7980.........90.........100......... 110.........120.........130.........140.........150.....
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Query Sequence  FAAGLKRKESHGKVVFGSVQSVARNLDAFQG. . . EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFR
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Template Sequence  MTGDIT. INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWE. . ETIILLPDKVRYVFLSATIPN
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   222..... ..230.........240.........250.........260.........270....... ..280.........290........
 
   156...160.........170.........180.........190.........200.........210.........220.........230.....
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Query Sequence  LGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ
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Template Sequence  AMEFAEWICKIHSQPCHIVYTNFRPT. . . . . . . . . . . . . . . . PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIAK
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   299300.........310.........320.... .....330.........340.........350.........360..
 
   236...240.........250.........260.........270.... ....
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Query Sequence  RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EDAA
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Template Sequence  GDIYKIVKMIWK. . KKYNPVIVFSFSKRDCEELALKMSKLDFNSDALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG
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   392.......400... ......410.........420.........430.........440.........450.........460.........
 
   279280.........290.........300.........310.........320......... 330.........340.........
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Query Sequence  LITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTE. . . . . . . . . SVSLYQQIVGRGLRLAPGKT
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Template Sequence  IHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMK. . . TVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDR
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   474.....480.........490.........500.........510.. .......520.........530.........540.........550
 
   350.........360.........370.....
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Query Sequence  DCLILDYAGNPHDLYAPEVGTPKGKS
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Template Sequence  GIVIMMIDEKMEPQVAKGMVKGQADR
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   553......560.........570........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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