Job Description P33919 Confidence 99.76% Date Thu Jan 5 11:52:45 GMT 2012 Rank 95 Aligned Residues 153 % Identity 17% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		T	L	R	P	Y	Q	Q	E	A	V	D	A	T	L	N	H	F	R	R	H	K	T	P	A	V	I	V	L	P	T	G	A	G	K	S	L	V	I	A	E	L	A	R	L	A	.	.	.	.	R	G	R	V	L	V	L	A	H	V	K	E	L	V	A	Q	N	H	A	K	Y	Q	A	L	G	L	E	A	D	I	F
Query Conservation																																															.	.	.	.
Alig confidence																	.	.	.	.	.																										.	.	.	.																												.	.	.	.
Template Conservation																	.	.	.	.	.																																																									.	.	.	.
Template Sequence		K	P	T	P	I	Q	S	Q	A	W	P	I	I	L	Q	.	.	.	.	.	G	I	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G	P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E	C	S	K	Y	S	Y	K	.	.	.	.
Template Known Secondary structure		S														T	.	.	.	.	.	T									T	T	S															T					S						S	S																	T	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.																																																									.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		A	A	G	L	K	R	K	E	S	H	G	K	V	V	F	G	S	V	Q	S	V	A	R	N	L	D	A	F	.	.	.	Q	G	E	F	S	L	L	I	V	D	E	C	H	R	I	G	D	D	E	E	S	Q	Y	Q	Q	I	L	T	H	L	T	K	V	N	P	H	L	R	L	L	G	L	T	A	T	P	F	R	L
Query Conservation																														.	.	.
Alig confidence		.																												.	.	.																										.	.
Template Conservation		.																																																								.	.
Template Sequence		.	G	L	K	S	I	C	I	Y	G	V	D	I	I	I	A	T	P	G	R	L	N	D	L	Q	M	N	N	S	V	N	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	L	D	M	E	F	E	P	Q	I	R	.	.	K	I	L	L	D	V	R	P	D	R	Q	T	V	M	T	S	A	T	W	P	D	T
Template Known Secondary structure		.	T										S															T	T		S			T	T															T	T							.	.						S		S	S								S	S
Template Predicted Secondary structure		.																																																								.	.
Template SS confidence
			332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.			.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	G	W	I	Y	Q	F	H	Y	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	Q	L	A	L	S	Y	L	K	D	P
Template Known Secondary structure											S	S
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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