Job Description P33919 Confidence 100.00% Date Thu Jan 5 11:52:45 GMT 2012 Rank 33 Aligned Residues 315 % Identity 16% Template c3i5yA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp Resolution 2.49 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.											.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		T	L	R	P	Y	Q	Q	E	A	V	D	A	T	L	N	H	F	R	R	H	K	T	P	A	V	I	V	L	P	T	G	A	G	K	S	L	V	I	A	E	L	A	R	L	A	.	.	.	.	.	.	.	.	.	.	R	G	R	V	L	V	L	A	H	V	K	E	L	V	A	Q	N	H	A	K	Y	Q	A	L	.
Query Conservation																																															.	.	.	.	.	.	.	.	.	.																									.
Alig confidence																	.	.	.																												.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																	.	.	.
Template Sequence		G	L	T	P	V	Q	Q	K	T	I	K	P	I	L	S	.	.	.	S	E	D	H	D	V	I	A	R	A	K	T	G	T	G	K	T	F	A	F	L	I	P	I	F	Q	H	L	I	N	T	K	F	D	S	Q	Y	M	V	K	A	V	I	V	A	P	T	R	D	L	A	L	Q	I	E	A	E	V	K	K	I	H
Template Known Secondary structure		S															.	.	.	S	S										T	T	S																	T	T	T	S	S	T	T	S								S	S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
									73	.	.	.	.	.	.	80	.	.	.	.	.	.	.								.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																.	.	.	.	.	.	.																							.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																.	.	.	.	.	.	.																							.	.	.	.
Query Sequence		.	.	.	.	.	.	.	G	L	E	A	D	I	F	A	A	G	L	K	R	K	E	.	.	.	.	.	.	.	S	H	G	K	V	V	F	G	S	V	Q	S	V	A	R	N	L	D	A	F	Q	G	.	.	.	.	E	F	S	L	L	I	V	D	E	C	H	R	I	G	D	D	E	E	S	Q	Y	Q	Q	I	L
Query Conservation		.	.	.	.	.	.	.																.	.	.	.	.	.	.																							.	.	.	.
Alig confidence		.	.	.	.	.	.	.																.	.	.	.	.	.	.																							.	.	.	.
Template Conservation
Template Sequence		D	M	N	Y	G	L	K	K	Y	A	C	V	S	L	V	G	G	T	D	F	R	A	A	M	N	K	M	N	K	L	R	P	N	I	V	I	A	T	P	G	R	L	I	D	V	L	E	K	Y	S	N	K	F	F	R	F	V	D	Y	K	V	L	D	E	A	D	R	L	L	E	I	G	F	R	D	D	L	E	T	I
Template Known Secondary structure			T		G	G	G	G	G	S							T	T	S															S																						T	T								T					T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		135	.	.	.	.	140						.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.
Query SS confidence								.	.	.	.	.
Query Sequence		T	H	L	T	K	V	.	.	.	.	.	N	P	H	L	R	L	L	G	L	T	A	T	P	F	R	L	G	K	G	W	I	Y	Q	F	H	Y	H	G	M	V	R	G	D	E	K	A	L	F	R	D	C	I	Y	E	L	P	L	R	Y	M	I	K	H	G	Y	L	T	P	P	E	R	L	D	M	P	V	V	Q	Y
Query Conservation								.	.	.	.	.
Alig confidence								.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.											.	.
Template Sequence		S	G	I	L	N	E	K	N	S	K	S	A	D	N	I	K	T	L	L	F	S	A	T	L	D	D	K	V	Q	K	L	A	N	N	I	M	N	K	K	E	C	L	F	L	D	T	V	D	K	N	E	P	E	A	H	E	R	I	.	.	.	.	.	.	.	.	.	.	D	Q	S	V	V	I	S	E	K	F	.	.
Template Known Secondary structure										S	S		T	T									S	S			T						T	G	G	G			S	S							S	S		S	S	S		S	S		T	T		.	.	.	.	.	.	.	.	.	.								S	S	S	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.											.	.	.	.	.	.	.	350	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.						.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.
Query Sequence		D	F	S	R	L	Q	A	Q	S	N	G	L	F	S	E	A	D	L	N	R	E	L	K	K	Q	Q	R	I	T	P	H	I	I	S	Q	I	M	E	F	A	A	T	R	K	G	V	M	I	F	A	A	T	V	E	H	A	K	E	I	V	G	L	L	P	.	.	.	.	.	A	E	D	A	A	L	I	T	G	D	T
Query Conservation																																																																		.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	S	I	F	A	A	V	E	H	I	K	K	Q	I	K	E	R	D	S	N	Y	K	A	I	I	F	A	P	T	V	K	F	T	S	F	L	C	S	I	L	K	N	E	F	K	K	D	L	P	I	L	E	F	H	G	K	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																	T	T	T									S	S																T	T	T	S						S	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																								353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	A	E	R	D	V	L	I	E	N	F	K	A	Q	R	F	R	Y	L	V	N	V	A	V	L	T	T	G	F	D	A	P	H	V	D	L	I	A	I	L	R	P	T	E	S	V	S	L	Y	Q	Q	I	V	G	R	G	L	R	L	A	P	G	K	T	D	C	L	I	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	N	K	R	T	S	L	V	K	R	F	K	K	D	E	S	G	I	L	V	C	T	D	V	G	A	R	G	M	D	F	P	N	V	H	E	V	L	Q	I	G	V	P	S	E	L	A	N	Y	I	H	R	I	G	R	T	A	R	S	G	K	E	G	S	S	V	L	F	I	C
Template Known Secondary structure																	S	S							G	G	G	T	S	S				T	T								S			S	S	T								T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions