Job Description P33919 Confidence 100.00% Date Thu Jan 5 11:52:45 GMT 2012 Rank 5 Aligned Residues 313 % Identity 26% Template c3h1tA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50													.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	F	T	L	R	P	Y	Q	Q	E	A	V	D	A	T	L	N	H	F	R	R	H	K	T	P	A	V	I	V	L	P	T	G	A	G	K	S	L	V	I	A	E	L	A	R	L	A	R	G	.	.	.	.	.	.	.	.	.	.	.	.	R	V	L	V	L	A	H	V	K	E	L	V	A	Q	N	H	A	K
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	H	H	V	P	R	Y	Y	Q	Q	I	A	I	N	R	A	V	Q	S	V	L	Q	G	K	K	R	S	L	I	T	X	A	T	G	T	G	K	T	V	V	A	F	Q	I	S	W	K	L	W	S	A	R	W	N	R	T	G	D	Y	R	K	P	R	I	L	F	L	A	D	T	F	T	P	F	G	D	A	R	H	K
Template Known Secondary structure																							T	T		S								T	T	S																T	T			S	S		S	S	S												T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		Y	Q	A	L	G	L	E	A	D	I	F	A	A	G	L	K	R	K	E	S	H	G	K	V	V	F	G	S	V	Q	S	V	A	R	N	L	D	A	F	Q	G	.	E	F	S	L	L	I	V	D	E	C	H	R	I	G	D	D	E	E	S	Q	Y	Q	Q	I	L	T	H	L	T	K	V	N	P	H	L	R	L	L
Query Conservation																																											.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	G	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	R	E	I	Y	F	A	I	Y	Q	S	I	P	G	L	Y	K	E	F	P	Q	D	F	F	D	L	I	I	I	D	E	C	H	W	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	I	L	E	Y	F	E	P	A	F	Q	I
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S						G	G	G				G	G	G	G	S		T	T	S		S					S					.	.	.	.	.	.	.	.	.	.	.	.	.							S	T	T	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270															.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.														.	.	.	.	310	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	T	A	T	P	F	R	L	G	K	G	W	I	Y	Q	F	H	Y	H	G	M	V	R	G	D	E	K	A	L	F	R	D	C	I	Y	E	L	P	L	R	Y	M	I	K	H	G	Y	L	T	P	P	E	R	L	D	M	P	V	V	Q	Y	D	F	S	R	L	Q	A	Q	S	N	G	L	F	S	E	A	D	L
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	X	T	A	T	P	L	R	E	D	N	R	D	T	Y	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	N	P	I	Y	T	Y	S	L	R	Q	G	I	D	D	G	F	L	A	P	Y	R	V	H	R	V	I	S	E	V	D	A	T	K	D	F	E	R	V	I	A	L	K	A	R	T	D	A	F
Template Known Secondary structure					S	S		S		T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	S		S		S												T	S	S											T	T					S										T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.														.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.													.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	R	E	L	K	K	Q	Q	R	I	T	P	H	I	I	S	Q	I	M	E	F	A	A	T	R	K	G	V	M	I	F	A	A	T	V	E	H	A	K	E	I	V	G	L	L	P	A	E	D	.	.	.	.	.	.	.	.	.	.	.	.	A	A	L	I	T	G	D	T	P	G	A	E	R	D	V	L	I	E	N
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	H	L	T	D	.	.	.	.	.	.	.	.	.	.	.	F	X	K	R	T	D	R	F	A	K	T	I	V	F	C	V	D	Q	E	H	A	D	E	X	R	R	A	L	N	N	L	N	S	D	L	S	R	K	H	P	D	Y	V	A	R	V	T	S	E	E	G	K	I	G	K	G	H	L	S	R	F	Q	E
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.							T	T	S							S	S															T					T	T		T	T	S					S	S	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		426	.	.	.	430	.												.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		F	K	A	Q	R	F	R	Y	L	V	N	V	A	V	L	T	T	G	F	D	A	P	H	V	D	L	I	A	I	L	R	P	T	E	S	V	S	L	Y	Q	Q	I	V	G	R	G	L	R	L	A	P	.	.	G	K	T	D	C	L	I	L	D	Y	A	G	N	P	H	D	L	Y
Query Conservation																																																					.	.
Alig confidence																																																					.	.
Template Conservation
Template Sequence		L	E	T	S	T	P	V	I	L	T	T	S	Q	L	L	T	T	G	V	D	A	P	T	C	K	N	V	V	L	A	R	V	V	N	S	X	S	E	F	K	Q	I	V	G	R	G	T	R	L	R	E	D	Y	G	K	L	W	F	N	I	I	D	Y	T	G	S	A	T	Q	N	F
Template Known Secondary structure		T	T										S	S	T	T	T	T	T				T	T								S													T	T	S				B	G	G	G	T	B	S								S	S	S					T
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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