Return to main results Retrieve Phyre Job Id

Job DescriptionP33919
Confidence100.00%DateThu Jan 5 11:52:45 GMT 2012
Rank43Aligned Residues305
% Identity18%Templatec3fhtA_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of human dbp5 in complex with amppnp and rna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40........ .50.........60.........70.......
Predicted Secondary structure 













......









Query SS confidence 












































. . . . . .




























Query Sequence  TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA. . . . . . RGRVLVLAHVKELVAQNHAKYQALGLEAD
Query Conservation   

  
  

              

   





          ......   

 
 
   
  
             
Alig confidence 














...


























......




























Template Conservation       
  

  

 ...  
  


 








   

 
             

 
   
  
             
Template Sequence  RPSKIQENALPLMLA. . . EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP
Template Known Secondary structure  S

S...SS




TTS


TTS
S


SSTTTST
Template Predicted Secondary structure 



...






















Template SS confidence 















































































   114.....120........ .130.........140.........150.........160.........170.........180.........190
 
   78.80 .........90.........100....... ..110.........120.........130.........140.....
Predicted Secondary structure  ........











....












Query SS confidence 


. . . . . . . .


























. . . .





































Query Sequence  IFA. . . . . . . . AGLKRKESHGKVVFGSVQSVARNLDAF. . . . QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR
Query Conservation     ........           
 
 
   
       ....      






                
        
Alig confidence 


........


























....




















.















Template Conservation                                                                 .                
Template Sequence  ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH. QDQSIRIQRMLPRNCQ
Template Known Secondary structure  T


TT



TT




S
TTS
SS
GGG

TSTTTT.TS
TT
Template Predicted Secondary structure 



































.








Template SS confidence 















































































   191........200.........210.........220.........230.........240.........250... ......260.........
 
   146...150.........160.........170.........180.........190.........200.........210.........220.....
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEA
Query Conservation   
  



                                     
    
                             
Alig confidence 








































.......................................
Template Conservation                           
               .......................................
Template Sequence  MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S


SSS



GGGSS
TT.......................................
Template Predicted Secondary structure 




















.......................................
Template SS confidence 















































































   270.........280.........290.........300.........310
 
   226...230.........240.........250.........260.........270.. .......280.........290.........300...
Predicted Secondary structure 







..













Query SS confidence 














































. .






























Query Sequence  DLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL. . PAEDAALITGDTPGAERDVLIENFKAQRFRY
Query Conservation                     
        
 


      
  
   
..                
             
Alig confidence  ....










































..






























Template Conservation  ....                          
                                                
Template Sequence  . . . . YVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV
Template Known Secondary structure  ....
SSSSS
SSTT



TTS
TTS
S
Template Predicted Secondary structure  ....






















































Template SS confidence 















































































   311........320.........330.........340.........350.........360.........370.........380......
 
   304.....310.........320.........330.. .......340.........350.....
Predicted Secondary structure 











......







Query SS confidence 




























. . . . . .






















Query Sequence  LVNVAVLTTGFDAPHVDLIAILRPTESVS. . . . . . LYQQIVGRGLRLAPGKTDCLILD
Query Conservation 

 
  
  
 
 
    

      
  ......   
  

  
    
    
 
Alig confidence 




























......






















Template Conservation 



     




 
  

    
             

 




 
  
    
  
Template Sequence  LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD
Template Known Secondary structure 
GGGTSS


TTSS

B
SSSSB
TTSS
TT


Template Predicted Secondary structure 




























Template SS confidence 

























































   387..390.........400.........410.........420.........430.........440....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions