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Job DescriptionP33919
Confidence100.00%DateThu Jan 5 11:52:45 GMT 2012
Rank16Aligned Residues327
% Identity20%Templatec2zj2A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative ski2-type helicase; PDBTitle: archaeal dna helicase hjm apo state in form 1
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40........ .50.........60.........70.. .
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Query Sequence  MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA. . . . RGRVLVLAHVKELVAQNHAKYQAL. . . G
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Template Sequence  GIESFYPPQAEALKSGI. . . . LEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIG
Template Known Secondary structure  T

B

TTTG....GGT
S
GGGT
SSSTTSTGGGGGGT
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   20.........30...... ...40.........50.........60.........70.........80.........90.....
 
   74.....80....... ..90.........100......... 110.........120.........130.........140.......
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Query Sequence  LEADIFAAGLKRKE. . . SHGKVVFGSVQSVARNLDAFQG. . . EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLL
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Template Sequence  LRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVI. . LAHMLGKAQII
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S

S


GGGGG
ST
GGGGGTGGGGG
TTT..BTTB
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   96...100.........110.........120.........130.........140.........150.........160.. .......170...
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  GLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADL
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Template Sequence  GLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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S
TT



SS
TT........................................
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   174.....180.........190.........200.........210...
 
   228.230.........240.........250.........260.........270....
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Query Sequence  NRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  . TWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKA
Template Known Secondary structure  .TTS

SSTTT


SSGGG

S

S
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   214.....220.........230.........240.........250.........260.........270.........280.........290..
 
   275....280.........290.........300.........310.........320......... 330.........340........
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Query Sequence  . . EDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTE. . . . SVSLYQQIVGRGLRLAPGK
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Template Sequence  IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDE
Template Known Secondary structure  TT
TTS
TTSS

STT


BS

STT

TTB

TTT
S
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   293......300.........310.........320.........330.........340.........350.........360.........370..
 
   349350.........360.........370....
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Query Sequence  TDCLILDYAGNPHDLYAPEVGTPKGK
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Template Sequence  VGEGIIVSTSDDPREVMNHYIFGKPE
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SSS
TSS


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   377..380.........390.........400..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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