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Job DescriptionP33919
Confidence96.84%DateThu Jan 5 11:52:45 GMT 2012
Rank218Aligned Residues109
% Identity18%Templatec2zamA_
PDB info PDB header:protein transportChain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PYQQEAVDATLNHFRRH. . . . . . . . . . KTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL. . . . . . VAQNHAKYQ
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Template Sequence  EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSSEKLVKNLFQLAR
Template Known Secondary structure  T
GGGS
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Query Sequence  ALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT
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Template Sequence  ENKP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SIIFIDEIDSSEAARRIKTEFLVQMQGVGVDNDGILVLG
Template Known Secondary structure  T
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   225... .230.........240.........250.........260.......
 
   151.
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Query Sequence  AT
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   277.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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