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Job DescriptionP33919
Confidence100.00%DateThu Jan 5 11:52:45 GMT 2012
Rank40Aligned Residues256
% Identity17%Templatec2z83A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40...... ...50.........60.........70.........80.........90.......
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Query Sequence  RHKTPAVIVLPTGAGKSLVIAELAR. . . . LARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSV
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Template Sequence  RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR. . . . . . . . . GLPVRYQTGNEIVDVMCH
Template Known Secondary structure  STT



TTS
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   185....190.........200.........210.........220.........230....... ..240.........250.....
 
   98.100.... .....110.........120.........130.........140.........150.........160.........170......
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Query Sequence  QSVARNL. DAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA
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Template Sequence  ATLTHRLMSPNVPNYNLFVMDEAHFTDPASIAARGYIA. . TKVELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQDEIPD
Template Known Secondary structure  S





SSSTT

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   264.....270.........280.........290.........300. ........310.........320.........330.........340.
 
   177..180.........190.........200.........210.........220.........230.........240.........250......
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Query Sequence  LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVM
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Template Sequence  RAWSSGY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EWITEYAGKTV
Template Known Secondary structure  S

SS

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   343...... 350.........360
 
   257..260.........270...... ...280.........290.........300.........310...... .
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Query Sequence  IFAATVEHAKEIVGLLPAED. . AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDA. . . . . . . . . . . . . . . . . P
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Template Sequence  WFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEY. . . . PKCKNGDWDFVITTDISA. NFGASRVIDCRKSVKPTILEEG
Template Known Secondary structure 
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TT

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   361........370.........380.........390..... ....400.........410... ......420.........430.....
 
   318.320.........330.........340.........350.....
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Query Sequence  HVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD
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Template Sequence  EGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYG
Template Known Secondary structure  S

S


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   439440.........450.........460.........470......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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