Job Description P33919 Confidence 100.00% Date Thu Jan 5 11:52:45 GMT 2012 Rank 40 Aligned Residues 256 % Identity 17% Template c2z83A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 Resolution 1.80 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		R	H	K	T	P	A	V	I	V	L	P	T	G	A	G	K	S	L	V	I	A	E	L	A	R	.	.	.	.	L	A	R	G	R	V	L	V	L	A	H	V	K	E	L	V	A	Q	N	H	A	K	Y	Q	A	L	G	L	E	A	D	I	F	A	A	G	L	K	R	K	E	S	H	G	K	V	V	F	G	S	V
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.
Template Sequence		R	K	R	Q	M	T	V	L	D	L	H	P	G	S	G	K	T	R	K	I	L	P	Q	I	I	K	D	A	I	Q	Q	R	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	.	.	.	.	.	.	.	.	.	G	L	P	V	R	Y	Q	T	G	N	E	I	V	D	V	M	C	H
Template Known Secondary structure		S	T	T									T	T	S		T	T	T	T												T	T									S											T	T	.	.	.	.	.	.	.	.	.	T	S										S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.										.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		98	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		Q	S	V	A	R	N	L	.	D	A	F	Q	G	E	F	S	L	L	I	V	D	E	C	H	R	I	G	D	D	E	E	S	Q	Y	Q	Q	I	L	T	H	L	T	K	V	N	P	H	L	R	L	L	G	L	T	A	T	P	F	R	L	G	K	G	W	I	Y	Q	F	H	Y	H	G	M	V	R	G	D	E	K	A
Query Conservation									.
Alig confidence									.																															.	.
Template Conservation																																								.	.
Template Sequence		A	T	L	T	H	R	L	M	S	P	N	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y	I	A	.	.	T	K	V	E	L	G	E	A	A	A	I	F	M	T	A	T	P	P	G	T	T	D	P	F	P	D	S	N	A	P	I	H	D	L	Q	D	E	I	P	D
Template Known Secondary structure										S							S					S	S	T	T			S												.	.					T	T	S								S	S		T	T				S	S				S	S											S
Template Predicted Secondary structure																																								.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	R	D	C	I	Y	E	L	P	L	R	Y	M	I	K	H	G	Y	L	T	P	P	E	R	L	D	M	P	V	V	Q	Y	D	F	S	R	L	Q	A	Q	S	N	G	L	F	S	E	A	D	L	N	R	E	L	K	K	Q	Q	R	I	T	P	H	I	I	S	Q	I	M	E	F	A	A	T	R	K	G	V	M
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	W	S	S	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	I	T	E	Y	A	G	K	T	V
Template Known Secondary structure		S			S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		343	.	.	.	.	.	.																																																															350	.	.	.	.	.	.	.	.	.	360
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.																		.
Predicted Secondary structure																						.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	F	A	A	T	V	E	H	A	K	E	I	V	G	L	L	P	A	E	D	.	.	A	A	L	I	T	G	D	T	P	G	A	E	R	D	V	L	I	E	N	F	K	A	Q	R	F	R	Y	L	V	N	V	A	V	L	T	T	G	F	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P
Query Conservation																						.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.														.	.	.	.																			.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.																			.
Template Sequence		W	F	V	A	S	V	K	M	G	N	E	I	A	M	C	L	Q	R	A	G	K	K	V	I	Q	L	N	R	K	S	Y	D	T	E	Y	.	.	.	.	P	K	C	K	N	G	D	W	D	F	V	I	T	T	D	I	S	A	.	N	F	G	A	S	R	V	I	D	C	R	K	S	V	K	P	T	I	L	E	E	G
Template Known Secondary structure					S															T	T							S	T	T						G	.	.	.	.	G	G	S	S	S				S					S	S				.			S		S																S	S
Template Predicted Secondary structure																																					.	.	.	.																			.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.					.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	D	L	I	A	I	L	R	P	T	E	S	V	S	L	Y	Q	Q	I	V	G	R	G	L	R	L	A	P	G	K	T	D	C	L	I	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	R	V	I	L	G	N	P	S	P	I	T	S	A	S	A	A	Q	R	R	G	R	V	G	R	N	P	N	Q	V	G	D	E	Y	H	Y	G
Template Known Secondary structure		S							S														T	T	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions