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Job DescriptionP33919
Confidence97.37%DateThu Jan 5 11:52:45 GMT 2012
Rank186Aligned Residues143
% Identity11%Templatec2x8aA_
PDB info PDB header:nuclear proteinChain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20... ......30.........40.........50.........60.........70.....
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Query Sequence  PYQQEAVDATLNHFRRH. . . . . . . . . . . KTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLE
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Template Sequence  EDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGP. ELLNMYVGESER. . . .
Template Known Secondary structure  TSTT



SSSTTS
TT
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   587..590.........600.........610.........620.........630.........640......... 650.........660.
 
   76...80.........90.........100.........110.........120.........130.........140.........150.....
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Query Sequence  ADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . AVRQVFQRAKNSAPCVIFFDEVDALCPSVRVVNQLLTEMDGLEARQQVFIMAATNRPD
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   662.......670.........680.........690.........700.........710.........
 
   156...160.........170......
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Query Sequence  LGKGWIYQFHYHGMVRGDEKA
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Template Sequence  IIDPAILRPGRLDKTLFVGLP
Template Known Secondary structure  GS
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   729730.........740.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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