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Job DescriptionP33919
Confidence99.07%DateThu Jan 5 11:52:45 GMT 2012
Rank135Aligned Residues114
% Identity25%Templatec2wjyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40........ .50.........60.........70.........
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Query Sequence  TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA. . . . RGRVLVLAHVKELVAQNHAKYQALGLEADIF
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Template Sequence  DLNHSQVYAVKTVLQ. . . . . RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL
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T.....SS

TTS
TT
SS
SSTTT


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   470.........480.... .....490.........500.........510.........520.........530.........540....
 
   80......... 90.........100....
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Query Sequence  AAGLKRKESH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GKVVFGSVQSVARNL
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Template Sequence  CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPR
Template Known Secondary structure 

GGGGG


TTGGGBT
TT
TTTS



STGGGG
TT
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   545....550.........560.........570.........580.........590.........600.........610.........620....
 
   105....110.........120...
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Query Sequence  DAFQGEFSLLIVDECHRIG
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Template Sequence  LAKM. QFRSILIDESTQAT
Template Known Secondary structure  TTT
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STTGGGS
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   625... .630.........640..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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