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Job DescriptionP33919
Confidence99.94%DateThu Jan 5 11:52:45 GMT 2012
Rank59Aligned Residues287
% Identity20%Templatec2vl7A_
PDB info PDB header:unknown functionChain: A: PDB Molecule:xpd; PDBTitle: structure of s. tokodaii xpd4
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKR
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Template Sequence  RQWQAEKLGEAINALKHG. KTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLRANL. .
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TT.


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   910.........20...... ...30.........40.........50.........60.........70.........80.....
 
   86...90.........100......... 110.........120.
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Query Sequence  KESHGKVVFGSVQSVARNLDAFQG. . . . . . . . . . EFSLLIVDECHR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  . . KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRID
Template Known Secondary structure  ..GG
STSS
SSTTS

GGGTTGGGGGGGGGGG

TT


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   143......150.........160.........170.........180.........190.........200.........210.........220
 
   122.......130........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IGDDEESQYQQILTHLT. . . . . . . . . . .
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Template Conservation         
  
                             
                   
  
  
             
Template Sequence  AKKVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGS
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TT

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TT
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   221........230.........240.........250.........260.........270.........280.........290.........300
 
   139140.........150.........160.........170.........180.........190.........200....
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Query Sequence  . . . . . . . . . . . . . . KVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM
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Template Sequence  LVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSYKIVVNESGRGEYYYCPNVTSELRKRN. . . . . . . . . . . . . . .
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S
T

SS
SS

TT


TT







TT



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   301........310.........320.........330.........340.........350.........360.....
 
   205....210.........220.........230.........240.........250.........260.........270.........280....
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Query Sequence  PVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDT
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SNIPIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSGIPVIEENKKT
Template Known Secondary structure  ..............................T
SSS
TT
TTS
STTT
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   367..370.........380.........390.........400.........410......
 
   285....290.........300.........310.........320......... 330....
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Query Sequence  PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SVSLY
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Template Sequence  R. . . . HEEVLELMKTGKYLVMLVML. . . . . . . . . FESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVI
Template Known Secondary structure 
....TS



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TTST

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   417 ..420.........430....... ..440.........450.........460.........470.........480...
 
   335....340.........350.....
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Query Sequence  QQIVGRGLRLAPGKTDCLILD
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Template Sequence  KQTIGRAFRDPNDYVKIYLCD
Template Known Secondary structure 

STT


S
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   499500.........510.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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