Return to main results Retrieve Phyre Job Id

Job DescriptionP33919
Confidence100.00%DateThu Jan 5 11:52:45 GMT 2012
Rank39Aligned Residues264
% Identity18%Templatec2vbcA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus
Resolution3.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40........ .50.........60.........70.........80.........90.......
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Query Sequence  RHKTPAVIVLPTGAGKSLVIAELARLA. . . . RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSV
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Template Sequence  RKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPIRYQT. PAVKSDHTGREIVDLMCH
Template Known Secondary structure  STT



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   184.....190.........200.........210.........220.........230.........240.... .....250.........260..
 
   98.100......... 110.........120.........130.........140.........150.........160.........170.....
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Query Sequence  QSVARNLDAFQG. . EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK
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Template Sequence  ATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE. . MGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIP
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   263......270.........280.........290.........300..... ....310.........320.........330.........340
 
   176...180.........190.........200.........210.........220.........230.........240.........250.....
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Query Sequence  ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGV
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Template Sequence  ERSWNTGF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DWITDYQGKT
Template Known Secondary structure  SS


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   341....... .350........
 
   256...260.........270...... ...280.........290.........300.........310.........320......
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Query Sequence  MIFAATVEHAKEIVGLLPAED. . AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILR. . . . . . .
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Template Sequence  VWFVPSIKAGNDIANCLRKSGKRVIQLSRKT. . . . FDTEYPKTKLTDWDFVVTTDISEMGANFR. AGRVIDPRRCLKPVI
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   359360.........370.........380......... 390.........400.........410........ .420.........430...
 
   327..330.........340.........350.....
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Query Sequence  . . . . . . . . . . . . . PTESVSLYQQIVGRGLRLAPGKTDCLILD
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Template Sequence  LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS
Template Known Secondary structure  SSS

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   434.....440.........450.........460.........470.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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