Job Description P33919 Confidence 100.00% Date Thu Jan 5 11:52:45 GMT 2012 Rank 12 Aligned Residues 317 % Identity 19% Template c2va8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.				.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.																								.	.	.
Query SS confidence																																															.	.	.	.																								.	.	.
Query Sequence		T	L	R	P	Y	Q	Q	E	A	V	D	A	T	L	N	H	F	R	R	H	K	T	P	A	V	I	V	L	P	T	G	A	G	K	S	L	V	I	A	E	L	A	R	L	A	.	.	.	.	R	G	R	V	L	V	L	A	H	V	K	E	L	V	A	Q	N	H	A	K	Y	Q	A	.	.	.	L	G	L	E	A
Query Conservation																																															.	.	.	.																								.	.	.
Alig confidence																.	.	.	.																												.	.	.	.																								.	.	.
Template Conservation																.	.	.	.
Template Sequence		K	L	N	P	P	Q	T	E	A	V	K	K	G	L	.	.	.	.	L	E	G	N	R	L	L	L	T	S	P	T	G	S	G	K	T	L	I	A	E	M	G	I	I	S	F	L	L	K	N	G	G	K	A	I	Y	V	T	P	L	R	A	L	T	N	E	K	Y	L	T	F	K	D	W	E	L	I	G	F	K	V
Template Known Secondary structure		B											T	T	T	.	.	.	.	T	T	T									T	T	S																	S		S							S													G	G	G	G	G	G	T
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.					.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure													.	.	.																							.	.	.
Query SS confidence													.	.	.																							.	.	.
Query Sequence		D	I	F	A	A	G	L	K	R	K	E	.	.	.	S	H	G	K	V	V	F	G	S	V	Q	S	V	A	R	N	L	D	A	F	Q	G	.	.	.	E	F	S	L	L	I	V	D	E	C	H	R	I	G	D	D	E	E	S	Q	Y	Q	Q	I	L	T	H	L	T	K	V	N	P	H	L	R	L	L	G	L	T
Query Conservation													.	.	.																							.	.	.
Alig confidence													.	.	.																							.	.	.																					.	.	.
Template Conservation																																																													.	.	.
Template Sequence		A	M	T	S	G	D	Y	D	T	D	D	A	W	L	K	N	Y	D	I	I	I	T	T	Y	E	K	L	D	S	L	W	R	H	R	P	E	W	L	N	E	V	N	Y	F	V	L	D	E	L	H	Y	L	N	D	P	E	R	G	P	.	.	.	V	V	E	S	V	T	I	R	A	K	R	R	N	L	L	A	L	S
Template Known Secondary structure						S		S	S	S			G	G	G	G	G		S																		G	G	G	G	G								S	G	G	G	G	G		T	T	T			.	.	.											T	S
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	P	F	R	L	G	K	G	W	I	Y	Q	F	H	Y	H	G	M	V	R	G	D	E	K	A	L	F	R	D	C	I	Y	E	L	P	L	R	Y	M	I	K	H	G	Y	L	T	P	P	E	R	L	D	M	P	V	V	Q	Y	D	F	S	R	L	Q	A	Q	S	N	G	L	F	S	E	A	D	L	N	R	E
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	I	S	N	Y	K	Q	I	A	K	W	L	G	A	E	P	V	A	T	N	W	R	P	V	P	L	I	E	G	V	I	Y	P	E	R	K	K	K	E	Y	N	V	I	F	K	D	N	T	T	K	K	V	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S			T	T									T										S	S											S	S	T	T							T	T	S							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	K	Q	Q	R	I	T	P	H	I	I	S	Q	I	M	E	F	A	A	T	R	K	G	V	M	I	F	A	A	T	V	E	H	A	K	E	I	V	G	L	L	P	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	D	D	A	I	I	A	Y	T	L	D	S	L	S	K	N	G	Q	V	L	V	F	R	N	S	R	K	M	A	E	S	T	A	L	K	I	A	N	Y	M	N	F	V	S	L	D	E	N	A	L	S	E	I	L	K	Q	L	D	D	I	E	E	G	G	S	D	E	K	E	L	L	K	S	L
Template Known Secondary structure		.	.	.	.	.	.	.	S	S											T	T	T								S	S														T	T	T	S	S																T			S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
					276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	D	A	A	L	I	T	G	D	T	P	G	A	E	R	D	V	L	I	E	N	F	K	A	Q	R	F	R	Y	L	V	N	V	A	V	L	T	T	G	F	D	A	P	H	V	D	L	I	A	I	L	R	P	T	E	S	V	S	L	Y	Q	Q	I	V	G	R	G	L	R	L	A	P	G	K	T	D	C	L
Query Conservation		.	.	.
Alig confidence		.	.	.																																																			.	.	.
Template Conservation																																																							.	.	.
Template Sequence		I	S	K	G	V	A	Y	H	H	A	G	L	S	K	A	L	R	D	L	I	E	E	G	F	R	Q	R	K	I	K	V	I	V	A	T	P	T	L	A	A	G	V	N	L	P	A	R	T	V	I	I	G	D	.	.	.	I	P	I	M	E	Y	K	Q	M	S	G	R	A	G	R	P	G	F	D	Q	I	G	E	S
Template Known Secondary structure			T	T	T						T	T	S														T	T		S							G	G	G	G	G	S	S				B	S							.	.	.											T	T	B			T	T	T		S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.				.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		353	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	D	Y	A	G	N	P	H	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	V	V	R	D	K	E	D	V
Template Known Secondary structure						S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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