 |
Job Description | P33919 | Confidence | 98.37% | Date | Thu Jan 5 11:52:45 GMT 2012 |
Rank | 146 | Aligned Residues | 85 |
% Identity | 25% | Template | c2pjrF_ |
PDB info |
PDB header:hydrolase/dna | Chain: F: PDB Molecule:protein (helicase pcra); |
PDBTitle: helicase product complex
|
Resolution | 2.90 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | I | F | T | L | R | P | Y | Q | Q | E | A | V | D | A | T | L | N | H | F | R | R | H | K | T | P | A | V | I | V | L | P | T | G | A | G | K | S | L | V | I | A | E | L | A | R | L | A | . |
. |
. |
. |
. |
. |
. |
R | G | R | V | L | V | L | A | H | V | K | E | L | V | A | Q | N | H | A | K | Y | Q | A | L | G |
Query Conservation |   |
  |   |   |   |
|
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |
|
|   |
|   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |
|   |   |
|
|   | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|   |
|   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |   |
|
Template Sequence |   |
L | L | A | H | L | N | K | E | Q | Q | E | A | V | R | . |
. |
. |
. |
. |
. |
. |
T | T | E | G | P | L | L | I | M | A | G | A | G | S | G | K | T | R | V | L | T | H | R | I | A | Y | L | M | A | E | K | H | V | A | P | W | N | I | L | A | I | T | F | T | N | K | A | A | R | E | M | R | E | R | V | Q | S | L | L |
Template Known Secondary structure |   |
T | T | T | T | S |
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |
|
| S | S |
|  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  | T |  |  |  |  | T | T | T | S |
|
|
| G | G | G |  |  |  |  |  | S |
|  |  |  |  | T |  |  |  |  |  |  | T | T | T | S |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
708 | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 |
  |
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | E | A | D | I | F | A | A | G | L | K | R | K | E | S | H | G | K | V | V | F | G | S | V | Q | S | V | A | R | N | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |
|   |   |   |   |
Alig confidence |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |
|   |
|   |   |   |   |   |
|
Template Sequence |   |
G | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | A | E | D | V | W | I | S | T | F | H | S | M | C | V | R | I |
Template Known Secondary structure |   |
| T | . | . | . | . | . | . | . | . | . | . | . | . | T | S | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
781 | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|