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Job DescriptionP33919
Confidence97.67%DateThu Jan 5 11:52:45 GMT 2012
Rank174Aligned Residues124
% Identity18%Templatec2ja1A_
PDB info PDB header:transferaseChain: A: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor.
Resolution2.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40........ .50.........60.........70.........80.........90........
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Query Sequence  RHKTPAVIVLPTGAGKSLVIAELARLA. . . RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQ
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Template Sequence  QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI. . . . . . . . . . . DNRYSEEDVVSHNGLKVKAVPV. . . . . S
Template Known Secondary structure 


STTSSTT

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   6...10.........20.........30.........40...... ...50.........60........ .
 
   99100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  SVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFH
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Template Sequence  ASKDIFEHITEELDVIAIDEVQFFDGD. . . . IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLM
Template Known Secondary structure  SGGGGGGG

SS

SSGGGS
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   70.........80.........90...... ...100.........110.........120.........130..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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