Phyre 2 alignment of P33919 with c1ymfA

Job Description P33919
Confidence 100.00% Date Thu Jan 5 11:52:45 GMT 2012

Rank 45 Aligned Residues 269

% Identity 17% Template c1ymfA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:genome polyprotein [contains: flavivirin PDBTitle: crystal structure of yellow fever virus ns3 helicase2 complexed with adp

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence	R	H	K	T	P	A	V	I	V	L	P	T	G	A	G	K	S	L	V	I	A	E	L	A	R	L	A	.	.	.	.	R	G	R	V	L	V	L	A	H	V	K	E	L	V	A	Q	N	H	A	K	Y	Q	A	L	G	L	E	A	D	I	F	A	A	G	L	K	R	K	E	S	H	G	K	V	V	F	G	S	V
Query Conservation																												.	.	.	.
Alig confidence																												.	.	.	.																														.
Template Conservation																																																													.
Template Sequence	K	K	G	X	T	T	V	L	D	F	H	P	G	A	G	K	T	R	R	F	L	P	Q	I	L	A	E	C	A	R	R	R	L	R	T	L	V	L	A	P	T	R	V	V	L	S	E	X	K	E	A	F	H	G	L	D	V	K	F	H	.	T	Q	A	F	S	A	H	G	S	G	R	E	V	I	D	A	X	C	H
Template Known Secondary structure	S	T	T									T	T	S		T	T	T	T													T								S	S												T	T	S						.	S	S								S	S
Template Predicted Secondary structure																																																													.
Template SS confidence
	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

	98	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence	Q	S	V	A	R	N	L	D	A	F	Q	G	.	.	E	F	S	L	L	I	V	D	E	C	H	R	I	G	D	D	E	E	S	Q	Y	Q	Q	I	L	T	H	L	T	K	V	N	P	H	L	R	L	L	G	L	T	A	T	P	F	R	L	G	K	G	W	I	Y	Q	F	H	Y	H	G	M	V	R	G	D	E	K
Query Conservation													.	.
Alig confidence													.	.																													.	.
Template Conservation																																											.	.
Template Sequence	A	T	L	T	Y	R	X	L	E	P	T	R	V	V	N	W	E	V	I	I	X	D	E	A	H	F	L	D	P	A	S	I	A	A	R	G	W	A	A	H	R	A	.	.	R	A	N	E	S	A	T	I	L	X	T	A	T	P	P	G	T	S	D	E	F	P	H	S	N	G	E	I	E	D	V	Q	T	D	I	P
Template Known Secondary structure									S	S							S					T	T	T	T			S															.	.		T	T	S								S	S		T	T				S	S				S	S
Template Predicted Secondary structure																																											.	.
Template SS confidence
	268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

	176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	F	R	D	C	I	Y	E	L	P	L	R	Y	M	I	K	H	G	Y	L	T	P	P	E	R	L	D	M	P	V	V	Q	Y	D	F	S	R	L	Q	A	Q	S	N	G	L	F	S	E	A	D	L	N	R	E	L	K	K	Q	Q	R	I	T	P	H	I	I	S	Q	I	M	E	F	A	A	T	R	K	G	V
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	S	E	P	W	N	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	W	I	L	A	D	K	R	P	T
Template Known Secondary structure	S	S			S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T							S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	346	.	.	.	350	.	.																																																															.	.	.	.	.	.	.	360	.	.	.

	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.						.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																																							.	.	.	.	.														.
Query SS confidence																						.	.																																							.	.	.	.	.														.
Query Sequence	M	I	F	A	A	T	V	E	H	A	K	E	I	V	G	L	L	P	A	E	D	.	.	A	A	L	I	T	G	D	T	P	G	A	E	R	D	V	L	I	E	N	F	K	A	Q	R	F	R	Y	L	V	N	V	A	V	L	T	T	G	F	.	.	.	.	.	D	A	P	H	V	D	L	I	A	I	L	R	P	.
Query Conservation																						.	.																																							.	.	.	.	.														.
Alig confidence																						.	.																																							.	.	.	.	.														.
Template Conservation
Template Sequence	A	W	F	L	P	S	I	R	A	A	N	V	X	A	A	S	L	R	K	A	G	K	S	V	V	V	L	N	R	K	T	F	E	K	K	P	D	F	I	L	A	T	D	I	A	E	X	G	A	N	L	C	V	E	R	V	L	D	C	R	T	A	F	K	P	V	L	V	D	E	G	R	K	V	A	I	K	G	P	L
Template Known Secondary structure					S															T	T								S	S	S						S					S	S	G	G	G			T	T				S															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

	328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	E	S	V	S	L	Y	Q	Q	I	V	G	R	G	L	R	L	A	P	G	K	T	D	C	L	I	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	I	S	A	S	S	A	A	Q	R	R	G	R	I	G	R	N	P	N	R	D	G	D	S	Y	Y	Y	S
Template Known Secondary structure												T	T	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
	452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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