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Job DescriptionP60560
Confidence99.13%DateThu Jan 5 12:06:53 GMT 2012
Rank86Aligned Residues190
% Identity16%Templatec3navB_
PDB info PDB header:lyaseChain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   83......90.........100.........110........ .120.........130..... ....
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Query Sequence  EWQAFINNSSADVLKHVMVSTGTSDADFEKTKQILD. . LNPALNFVCIDVANGYS. . . . . . . . . . . . . . . . . . . . . EHFV
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Template Sequence  RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICF
Template Known Secondary structure  TB
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   140.........150...... ...160.........170.........180......
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Query Sequence  QFVAKAREAWPTKTICA. . . . . . . GNVVTGEMCEELILSGADIVKVGIGPGSVC. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDET
Template Known Secondary structure 
TTS

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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   187..190.........200.........210.........220.........230.........240.........250........
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Query Sequence  . . . . . . . . TTRVKTGVGYPQLSAVIECADAAHGLGGMIVSDGGCTTPGDVAKAFGGGADFVMLGGMLAGHEESGGRIVEE
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Template Sequence  LRAVAQLGKGYTYLLSRAPVHALLERLQQFD. . . APPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIE. . . . . . . .
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   163......170.........180.........190... ......200.........210.........220.........230.
 
   259260.........270.........280.........290.........300.........310...
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Query Sequence  NGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . THLDNPAKQLTELANFTQAMKKATK
Template Known Secondary structure  ..............................TTT
TTB
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   243......250.........260.......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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