Job Description P60560 Confidence 99.96% Date Thu Jan 5 12:06:53 GMT 2012 Rank 43 Aligned Residues 246 % Identity 15% Template c3gyeA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase, putative; PDBTitle: didydroorotate dehydrogenase from leishmania major Resolution 2.00 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	L	E	R	Q	F	T	F	K	H	S	G	Q	S	W	S	G	V	P	I	I	A	A	N	M	D	T	V	G	T	F	S	M	A	S	A	L	A	S	F	D	I	L	T	A	V	H	K	H	Y	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.
Template Sequence		M	S	L	Q	V	N	L	.	.	.	.	.	L	N	N	T	F	A	N	P	F	M	N	A	A	G	V	M	C	T	T	T	E	E	L	V	A	M	T	E	S	A	S	G	S	L	V	S	K	S	C	T	P	A	L	R	E	G	N	P	T	P	R	Y	Q	A	L	P	L	G	S	I	N	S	M	G	L	P	N	N
Template Known Secondary structure									.	.	.	.	.	T	T				S	S	S					T	T	S	S		S	S										S	S		S									S	S		B			S		S							T	T										B
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.						.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
				82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	E	E	W	Q	A	F	I	N	N	S	S	A	D	V	L	K	H	V	M	V	S	T	G	T	S	D	A	D	F	E	K	T	K	Q	I	L	D	L	N	P	A	L	N	F	V	C	I	D	V	A	N	G	Y	S	E	H	F	V	Q	F	V	A	K	A	R	E	A	W	P	T	K	T	I	C	A	G	N	V
Query Conservation		.	.
Alig confidence		.	.																																																																						.
Template Conservation																																																																									.
Template Sequence		G	F	D	F	Y	L	A	Y	A	A	E	Q	H	D	Y	G	K	K	P	L	F	L	S	M	S	G	L	S	M	R	E	N	V	E	M	C	K	R	L	A	A	V	A	T	E	K	G	V	I	L	E	L	N	L	D	F	D	A	M	R	Q	C	L	T	A	V	S	E	V	Y	P	.	H	S	F	G	V	K	M	P
Template Known Secondary structure													T			T	T	T										S	S																																												.	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.
		160	.								.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.														.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence				.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		V	T	.	.	.	.	.	.	.	G	E	M	C	E	E	L	I	L	S	G	A	D	I	V	K	V	G	I	G	P	G	S	V	C	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	V	K	T	G	V	G	Y	P	Q	L	S	A	V	I	E	C	A	D	A	A	H	G	L	.	.	G	G	M	I	V
Query Conservation				.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Alig confidence				.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		P	Y	F	D	F	A	H	F	D	A	A	A	E	I	L	N	E	F	P	K	V	Q	F	I	T	C	I	N	S	I	G	N	G	L	V	I	D	A	E	T	E	S	V	V	I	K	P	K	Q	G	F	G	G	L	G	G	R	Y	V	L	P	T	A	L	A	N	I	N	A	F	Y	R	R	C	P	G	K	L	I	F
Template Known Secondary structure					S													T		T	T																		T	T	T	T			S		S	G	G	G	G						G	G	G	G																T	T	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	G	G	C	T	T	P	G	D	V	A	K	A	F	G	G	G	A	D	F	V	M	L	G	G	M	L	A	G	H	E	E	S	G	G	R	I	V	E	E	N	G	E	K	F	M	L	F	Y	G	M	S	S	E	S	A	M	K	R	H	V	G	G	V	A	E	Y	R	A	A	E	G	K	T	V	K	L	P	L
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template Sequence		G	C	G	G	V	Y	T	G	E	D	A	F	L	H	V	L	A	G	A	S	M	V	Q	V	G	T	A	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	G	P	S	I	.	.	.	.
Template Known Secondary structure				S	S			S											T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T		.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.																																										.	.	.	280	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	P	V	E	N	T	A	R	D	I	L	G	G	L	R	S	A	C	T	Y	V	G	A	S	R	L	K	E	L	T	K	R	T	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	F	E	R	L	T	S	E	L	L	G	V	M	A	K	K	R	Y	Q	T	L	D	E	F	R	G	K	V	R
Template Known Secondary structure		.	.	.	.	.	.	.															T	T			S	G	G	G	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions