Job Description P60560 Confidence 86.41% Date Thu Jan 5 12:06:53 GMT 2012 Rank 268 Aligned Residues 175 % Identity 9% Template c3eb2A_ PDB info PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution Resolution 2.04 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		47	.	.	50	.	.	.	.	.							.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure											.	.	.	.	.	.																					.	.	.	.	.	.	.																						.	.
Query SS confidence											.	.	.	.	.	.																					.	.	.	.	.	.	.																						.	.
Query Sequence		V	P	I	I	A	A	N	M	D	.	.	.	.	.	.	T	V	G	T	F	S	M	A	S	A	L	A	S	F	D	I	L	T	A	V	.	.	.	.	.	.	.	H	K	H	Y	S	V	E	E	W	Q	A	F	I	N	N	S	S	A	D	V	L	.	.	K	H	V	M	V	S	T	G	T	S	D	A	D	F	E
Query Conservation											.	.	.	.	.	.																					.	.	.	.	.	.	.																						.	.
Alig confidence											.	.	.	.	.	.																					.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		F	P	Y	L	V	S	P	V	D	A	E	G	R	V	R	A	D	V	M	G	R	L	C	D	D	L	I	Q	A	G	V	H	G	L	T	P	L	G	S	T	G	E	F	A	Y	L	G	T	A	Q	R	E	A	V	V	R	A	T	I	E	A	A	Q	R	R	V	P	V	V	A	G	V	A	S	T	S	V	A	D	A
Template Known Secondary structure				B					B		T	T	S		B															T	T		S		B	B	T	T	S	G	G	G	T	G	G	G																		T	T	S	S		B							S	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.								.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180
Predicted Secondary structure																							.	.	.																									.	.	.	.	.	.	.																	.
Query SS confidence																							.	.	.																									.	.	.	.	.	.	.																	.
Query Sequence		K	T	K	Q	I	L	D	L	N	P	A	L	N	F	V	C	I	D	V	A	N	.	.	.	G	Y	S	E	H	F	V	Q	F	V	A	K	A	R	E	A	W	P	T	K	T	I	C	A	.	.	.	.	.	.	.	G	N	V	V	T	G	E	M	C	E	E	L	I	L	S	G	.	A	D	I	V	K	V	G	I
Query Conservation																							.	.	.																									.	.	.	.	.	.	.																	.
Alig confidence																							.	.	.																			.						.	.	.	.	.	.	.																	.							.	.
Template Conservation																																												.																																				.	.
Template Sequence		V	A	Q	A	K	L	Y	E	K	L	G	A	D	G	I	L	A	I	L	E	A	Y	F	P	L	K	D	A	Q	I	E	S	Y	F	R	A	I	A	D	A	V	E	.	I	P	V	V	I	Y	T	N	P	Q	F	Q	R	S	D	L	T	L	D	V	I	A	R	L	A	E	H	P	R	I	R	Y	I	K	D	.	.
Template Known Secondary structure												T		S									S	S																			S	.	S								T	T	T		S	S												T	S	T	T							.	.
Template Predicted Secondary structure																																												.																																				.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	G	S	V	C	T	T	R	V	K	T	G	V	G	Y	P	Q	L	S	A	V	I	E	C	A	D	A	A	H	G	L	G	G	M	I	V	S	D	G	G	C	T	T	P	G	D	V	A	K	A	F	G	G	G	A	D	F	V	M	L	G	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.							.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.							.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	T	N	T	G	R	L	L	S	I	I	N	R	C	G	D	A	.	L	Q	V	F	S	A	.	.	.	.	S	A	H	I	P	A	A	V	M	L	I	G	G	V	G	W	M	A	G	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S													G	G	G	.	S						.	.	.	.	T	T	S								T	T							G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.							.	.	.	.
Template SS confidence
																166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions