Job Description P60560 Confidence 40.93% Date Thu Jan 5 12:06:53 GMT 2012 Rank 429 Aligned Residues 150 % Identity 15% Template c3dfhC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3 Resolution 2.20 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																					.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	A	V	H	K	H	Y	S	V	E	E	W	Q	A	F	I	N	N	S	S	A	D	V	L	K	H	V	M	V	S	T	G	T	S	.	.	.	.	.	D	A	D	F	E	K	T	K	Q	I	L	D	L	N	P	A	L	N	F	V	C	I	D	V	A	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	T	H	A	T	S	D	T	M	E	G	I	Y	D	L	V	E	G	F	L	E	K	G	Y	K	H	I	R	C	Q	L	G	F	D	Q	D	Q	Y	M	D	N	T	L	T	M	F	K	S	L	R	E	K	Y	G	N	Q	F	H	I	L	H	D	V	H	E	R	L	F	P	N	Q	A	I	Q	F	A	K	E	V
Template Known Secondary structure									S	S														T	T																															T	T	S	S							T	T		S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
													134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																												.													.							.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																												.													.							.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	Y	S	E	H	F	V	Q	F	V	A	K	A	R	E	A	W	P	T	K	T	I	C	A	G	N	V	V	.	T	G	E	M	C	E	E	L	I	L	S	G	.	A	D	I	V	K	V	.	G	I	G	P	G	S	V	C	T	T	R	V	K	T	G	V	G	Y	P	Q	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																												.													.							.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																		.										.													.							.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	Y	K	P	Y	F	I	E	D	I	L	P	P	N	Q	T	E	W	L	D	N	I	R	S	Q	S	S	.	V	S	L	G	L	G	E	L	F	N	N	P	E	E	W	K	S	L	I	A	N	R	R	I	D	F	I	R	C	H	V	S	Q	I	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I
Template Known Secondary structure		G	G	G			S						S		T	T		G	G	G						T	T			.							T	T			S										T	T			S						T	T	T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.															.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		S	A	V	I	E	C	A	D	A	A	H	G	L	G	G	M	I	V	S	D	G	G	C	T	.	T	P	G	D	V	A	K	A	F	G	G	G	A
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		T	P	A	L	K	L	G	H	L	C	Q	N	F	G	V	R	I	A	W	H	C	P	P	D	M	T	P	I	G	A	A	V	N	T	H	L	N	V
Template Known Secondary structure															T									T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions