Job Description P60560 Confidence 99.97% Date Thu Jan 5 12:06:53 GMT 2012 Rank 39 Aligned Residues 306 % Identity 15% Template c2vdcF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:glutamate synthase [nadph] large chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Resolution 9.50 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		V	L	I	R	P	K	R	S	T	L	K	S	R	S	D	V	E	L	E	R	Q	F	T	F	K	H	S	G	Q	S	W	S	G	V	P	I	I	A	A	N	M	D	T	V	G	.	.	.	.	.	T	F	S	M	A	S	A	L	A	S	F	D	I	L	T	A	V	H	K	H	Y	S	V	E	E	W	Q	A	F	I
Query Conservation																																															.	.	.	.	.
Alig confidence												.							.				.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation												.							.				.	.	.	.	.	.	.	.	.
Template Sequence		L	E	L	R	S	T	K	A	P	V	.	P	V	D	E	V	E	.	S	I	T	.	.	.	.	.	.	.	.	.	A	I	R	K	R	F	I	T	P	G	M	S	M	G	A	L	S	P	E	A	H	G	T	L	N	V	A	M	N	R	I	G	A	K	S	D	S	G	E	G	G	E	D	P	A	R	F	R	P	D
Template Known Secondary structure		B					S	S				.		G	G	G	S		.				.	.	.	.	.	.	.	.	.				T	T								B	T	T	B															T	T							S	S				G	G	G	G	S
Template Predicted Secondary structure												.							.				.	.	.	.	.	.	.	.	.
Template SS confidence
		829	830	.	.	.	.	.	.	.	.		.	840	.	.	.	.		.	.	.										.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.
		89	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.																									.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.
Predicted Secondary structure				.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query SS confidence				.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query Sequence		N	N	.	.	.	.	.	.	.	S	S	A	D	V	L	K	H	V	M	V	S	T	G	T	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	F	E	K	T	K	Q	I	L	D	L	N	P	A	L	N	F	V	C	I	D	V	A	N	G	.	.	Y	S
Query Conservation				.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Alig confidence				.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation
Template Sequence		K	N	G	D	N	W	N	S	A	I	K	Q	V	A	S	G	R	F	G	V	T	A	E	Y	L	N	Q	C	R	E	L	E	I	K	V	A	Q	G	A	K	P	G	E	G	G	Q	L	P	G	F	K	V	T	E	M	I	A	R	L	R	H	S	T	P	G	V	M	L	I	S	P	P	P	H	H	D	I	Y	S	I
Template Known Secondary structure		T	T	S						S						S	S		T	T							T	S		S									T	T		T	T	T						G	G	G										T			T	T							S	S		T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		898	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																												.	.	.																																.	.
Query SS confidence																												.	.	.																																.	.
Query Sequence		E	H	F	V	Q	F	V	A	K	A	R	E	A	W	P	T	K	T	I	C	A	G	N	V	V	T	.	.	.	G	E	M	C	E	E	L	I	L	S	G	A	D	I	V	K	V	G	I	G	P	G	S	V	C	T	T	R	V	K	T	.	.	G	V	G	Y	P	Q	L	S	A	V	I	E	C	A	D	A	A	H
Query Conservation																												.	.	.																																.	.
Alig confidence																												.	.	.																																.	.
Template Conservation
Template Sequence		E	D	L	A	Q	L	I	Y	D	L	K	Q	I	N	P	D	A	K	V	T	V	K	L	V	S	R	S	G	I	G	T	I	A	A	G	V	A	K	A	N	A	D	I	I	L	I	S	G	N	S	G	G	T	G	A	S	P	Q	T	S	I	K	F	A	G	L	P	W	E	M	G	L	S	E	V	H	Q	V	L	T
Template Known Secondary structure																T	T											T	T											T	T		S							T	T				S	S									S
Template Predicted Secondary structure
Template SS confidence
		978	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.
		211	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		G	L	G	.	.	.	.	G	M	I	V	S	D	G	G	C	T	T	P	G	D	V	A	K	A	F	G	G	G	A	D	F	V	M	L	G	G	M	L	A	G	H	E	E	S	G	G	R	I	V	E	E	N	G	E	K	F	M	L	F	Y	G	M	S	S	E	S	A	M	K	R	H	V	G	G	V	A	E	Y	R
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.																																					.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	R	L	R	H	R	V	R	L	R	T	D	G	G	L	K	T	G	R	D	I	V	I	A	A	M	L	G	A	E	E	F	G	I	G	T	A	S	L	I	A	M	.	.	.	G	C	I	M	V	R	Q	C	H	S	N	T	C	P	V	G	V	C	V	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T		T	T	T	S						S	S			S										T	T		S												T	.	.	.	T							G	G	G	T			T	T	S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1058	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100				.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	E	G	K	T	V	K	L	P	L	R	G	P	V	E	N	T	A	R	D	I	L	G	G	L	R	S	A	C	T	Y	V	G	A	S	R	L	K	E	L	T	K	R	T	T	F	I	R	V	Q	E	Q	E	N	R	I	F	N	N	L
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	D	K	L	R	Q	K	F	V	G	T	P	E	K	V	V	N	L	F	T	F	L	A	E	E	V	R	E	I	L	A	G	L	G	F	R	S	L	N	E	V	I	G	R	T	D	L	L	H	Q	V	S	R	G	A	E	H	L	D	D	L
Template Known Secondary structure		.					T	T																											T		S	S	S	G	G	G	T	T		G	G	G			B					S	S	S	S
Template Predicted Secondary structure		.
Template SS confidence
			1122	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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