 |
Job Description | P60560 | Confidence | 33.80% | Date | Thu Jan 5 12:06:53 GMT 2012 |
Rank | 469 | Aligned Residues | 141 |
% Identity | 12% | Template | c2oz3F_ |
PDB info |
PDB header:lyase | Chain: F: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; |
PDBTitle: crystal structure of l-rhamnonate dehydratase from azotobacter2 vinelandii
|
Resolution | 2.00 Å |
|
 |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | |
|
. | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
Query Sequence |   |
V | E | E | W | Q | A | F | I | N | N | S | S | A | D | V | L | K | H | V | M | V | S | T | G | T | S | D | A | D | F | E | K | T | K | Q | I | L | D | L | N | P | A | L | N | F | V | C | I | D | V | A | N | G | Y | S | E | H | F | V | Q | F | V | A | K | A | R | E | A | W | P | T | K | T | . |
. |
I | C | A | G | N |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   | . | . |
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . | . |
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |
|   |
|
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |   |   | . |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   | . |   |
|
|   |
|
|   |
|
|
Template Sequence |   |
L | K | K | N | L | E | E | L | A | T | X | R | E | R | V | G | P | D | F | W | L | X | F | D | C | W | X | S | L | . |
D | L | N | Y | A | T | R | L | A | R | G | A | R | E | Y | G | L | K | W | I | E | E | A | L | P | P | D | D | Y | W | G | Y | A | E | L | R | R | N | A | P | . |
T | G | X | X | V | T | T | G | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | S |  |  |  |  |  |
| T | T |
|
| . |
|  |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
|
|  |  |  |
|
| S |
| T | T |
|  |  |  |  |  |  |  |  |  |  | S |
| . | T | T |
|  |  |  |  |
| T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
191 | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | |
220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | |
260 | . | . | . | . | . | . | . | . |
  |
  |   |
159 | 160 | |
. | . | . | . | . | . | . | . | . | 170 | . | . | |
. | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
| . |
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | V | . |
T | G | E | M | C | E | E | L | I | L | S | G | . |
A | D | I | V | K | V | G | I | G | P | G | S | V | C | T | T | R | V | K | T | G | V | G | Y | P | Q | L | S | A | V | I | E | C | A | D | A | A | H | G | L | G | G | M | I | V | S | D | G | G | C | T | T | P | G | D | V | A | K | A | F | G | G | G | A |
Query Conservation |   |
|   | . |
|   |
|   |
|   |   |
|   |   |
|
| . |
|
|   |
|   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|
|
|   |
|   |
|
|   |
|
|
|
|
|
|
|
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|   |
|   |   |   |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |   |
|
|   |   |
|   |   |   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
Template Sequence |   |
H | E | A | T | R | W | G | F | R | X | L | L | E | X | G | C | C | D | I | I | Q | P | D | V | G | W | C | G | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | T | E | L | L | K | I | S | A | L | A | D | A | H | N | A | L | V | V | P | H | G | S | S | V | Y | S | Y | H | F | V | A | T | R | Q | N | S | P |
Template Known Secondary structure |   |
T |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |
|
|
| T | T | T | S | S |
| . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |
|
|
|
|
| T |  |  |  |  |  |  |  | T | T |
| T | T |
|
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
269 | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|