Return to main results Retrieve Phyre Job Id

Job DescriptionP60560
Confidence97.98%DateThu Jan 5 12:06:53 GMT 2012
Rank150Aligned Residues104
% Identity24%Templatec2nv2U_
PDB info PDB header:lyase/transferaseChain: U: PDB Molecule:pyridoxal biosynthesis lyase pdxs; PDBTitle: structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus2 subtilis
Resolution2.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   139140.........150....... ..160.........170.........180 .........190.........
Predicted Secondary structure 





.









..
















................
Query SS confidence 


















.






















. .


















. . . . . . . . . . . . . . . .
Query Sequence  VQFVAKAREAWPTKTICAG. NVVTGEMCEELILSGADIVKVGI. . GPGSVCTTRVKTGVGYPQL. . . . . . . . . . . . . . . .
Query Conservation     
  
        

 
. 
 
 
 
  
  



 
 
 
.. 

           
 
  ................
Alig confidence 











.





.






















..


















................
Template Conservation 
  
 

   

.





 



 











 










   

 
  
 





   







 

Template Sequence  PTIVEEVMNAVS. IPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEG
Template Known Secondary structure 
S.S
TT
TT
STTS

S
SS



GGG
SS
SSTT
Template Predicted Secondary structure 
.

























Template SS confidence 















































































   64.....70..... ....80.........90.........100.........110.........120.........130.........140..
 
   200.........210.........220.........
Predicted Secondary structure  ..................................................










Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .





























Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SAVIECADAAHGLGGMIVSDGGCTTPGDVA
Query Conservation  ..................................................  
           




 



 
 

 
Alig confidence  ..................................................





























Template Conservation 
 












 


 
 
 
   

 
  
 


    
    





  

  





 












Template Sequence  ASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAA
Template Known Secondary structure 
S


TTS

TS
GGGT

TS
SSB
S


S
Template Predicted Secondary structure 






















Template SS confidence 















































































   143......150.........160.........170.........180.........190.........200.........210.........220..
 
   230.........240...
Predicted Secondary structure 




Query SS confidence 













Query Sequence  KAFGGGADFVMLGG
Query Conservation 







 
 


Alig confidence 













Template Conservation 





 






Template Sequence  LMMQLGADGVFVGS
Template Known Secondary structure  TT
S

T
Template Predicted Secondary structure 




Template SS confidence 













   223......230......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions