Job Description P60560 Confidence 100.00% Date Thu Jan 5 12:06:53 GMT 2012 Rank 26 Aligned Residues 267 % Identity 18% Template c2e77B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:lactate oxidase; PDBTitle: crystal structure of l-lactate oxidase with pyruvate complex Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.							.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.
Query Sequence		M	R	I	E	E	D	L	K	L	G	F	K	D	V	L	I	R	P	K	R	S	T	L	K	S	R	S	D	V	E	L	E	R	Q	F	T	F	K	H	S	G	Q	S	W	S	G	V	P	I	I	A	A	N	M	D	T	V	G	.	.	.	.	.	.	T	F	S	M	A	S	A	L	A	S	F	D	I	L	T	A
Query Conservation																																																												.	.	.	.	.	.
Alig confidence								.	.	.											.	.															.	.	.	.	.																			.	.	.	.	.	.
Template Conservation								.	.	.											.	.															.	.	.	.	.
Template Sequence		K	R	A	N	D	R	.	.	.	A	W	K	H	K	L	L	Y	P	R	.	.	L	A	Q	D	V	E	A	P	D	T	S	T	E	I	.	.	.	.	.	L	G	H	K	I	K	A	P	F	I	M	A	P	I	A	A	H	G	L	A	H	T	T	K	E	A	G	T	A	R	A	V	S	E	F	G	T	I	M	S
Template Known Secondary structure								.	.	.	G	G	G	G							.	.		S					S		B						.	.	.	.	.	T	T				S	S	S							S		G	G	G	T		T	T													T	S
Template Predicted Secondary structure								.	.	.											.	.															.	.	.	.	.
Template SS confidence
		1051	.	.	.	.	.				.	.	.	1060	.	.	.	.	.	.			.	.	.	1070	.	.	.	.	.	.	.	.	.	1080						.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
		75	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure						.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	K	H	.	.	Y	S	V	E	E	W	Q	A	F	I	N	N	S	S	A	D	V	L	K	H	V	M	V	S	T	G	T	S	D	A	D	F	E	K	T	K	Q	I	L	D	L	N	P	A	L	N	F	V	C	I	D	V	A	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.												.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.
Template Sequence		I	S	A	Y	S	G	A	T	F	E	E	I	S	E	G	L	N	.	.	.	.	.	G	G	P	R	W	F	Q	I	Y	M	A	K	D	D	Q	Q	N	R	D	I	L	D	E	A	K	S	D	G	A	T	A	I	I	L	T	A	D	S	T	V	S	G	N	R	D	R	D	V	K	N	K	F	V	Y	P	F	G	M
Template Known Secondary structure				T	T		S	S										T	.	.	.	.	.	T											S	S															T		S							S		S	S										T	T				S	S
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		1121	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.						.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.
																									134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	E	H	F	V	Q	F	V	A	K	A	R	E	A	W	P	T	K	T	I	C	A	G	N	V	V	T	G	E	M	C	E	E	L	I	L	S	G	A	D	I	V	K	V	G	I	G	P	G	S	V	C	T	T	R	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																						.	.
Template Conservation																																										.																																						.	.
Template Sequence		P	I	V	Q	R	Y	L	R	G	T	A	E	G	M	S	L	N	N	I	Y	G	A	S	K	Q	K	I	S	P	R	D	I	E	E	I	A	G	H	S	G	.	L	P	V	F	V	K	G	I	Q	H	P	E	D	A	D	M	A	I	K	R	G	A	S	G	I	W	V	S	N	H	G	A	R	Q	L	Y	E	.	.
Template Known Secondary structure		T	T	T	G	G	G	T	T	S		G	G	G										S		S																.	S									S										T	T		S							G	G	G	T	S	S	S	S	.	.
Template Predicted Secondary structure																																										.																																						.	.
Template SS confidence
		1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	G	V	G	Y	P	Q	L	S	A	V	I	E	C	A	D	A	A	H	G	L	G	G	M	I	V	S	D	G	G	C	T	T	P	G	D	V	A	K	A	F	G	G	G	A	D	F	V	M	L	G	G	M	L	A	G	H	E	E	S	G	G	R	I	V	E	E	N	G	E	K	F	M	L	F	Y	G	M	S
Query Conservation
Alig confidence		.	.	.	.																			.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																			.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	A	P	G	S	F	D	T	L	P	A	I	A	E	R	V	N	K	R	.	V	P	I	V	F	D	S	G	V	R	R	G	E	H	V	A	K	A	L	A	S	G	A	D	V	V	A	L	G	R	P	V	L	F	G	L	A	L	G	G	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.																T	T	S	.	S						S	S			S										T	T		S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																			.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						1273	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290		.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	S	A	M	K	R	H	V	G	G	V	A	E	Y	R	A	A	E	G	K	T	V	K	L	P	L	R	G	P	V	E	N	T	A	R	D	I	L	G	G	L	R	S	A	C	T	Y	V	G	A	S	R	L	K	E	L	T	K	R	T	T	F	I	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	A	Y	S	V	L	D	Y	F	Q	K	D	L	T	R	V	M	Q	L	T	G	S	Q	N	V	E	D	L	K	G	.	L	D	L	F	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						T		S	B					T	T	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template SS confidence
																														1332	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.		.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions