Job Description P60560 Confidence 100.00% Date Thu Jan 5 12:06:53 GMT 2012 Rank 20 Aligned Residues 262 % Identity 19% Template c2a7nA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:l(+)-mandelate dehydrogenase; PDBTitle: crystal structure of the g81a mutant of the active chimera of (s)-2 mandelate dehydrogenase Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.							.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.
Query Sequence		M	R	I	E	E	D	L	K	L	G	F	K	D	V	L	I	R	P	K	R	S	T	L	K	S	R	S	D	V	E	L	E	R	Q	F	T	F	K	H	S	G	Q	S	W	S	G	V	P	I	I	A	A	N	M	D	T	V	G	.	.	.	.	.	.	T	F	S	M	A	S	A	L	A	S	F	D	I	L	T	A
Query Conservation																																																												.	.	.	.	.	.
Alig confidence								.	.	.											.	.															.	.	.	.	.																			.	.	.	.	.	.
Template Conservation								.	.	.											.	.															.	.	.	.	.
Template Sequence		V	K	H	N	R	D	.	.	.	V	F	Q	Q	W	R	F	K	P	K	.	.	R	L	V	D	V	S	R	R	S	L	Q	A	E	V	.	.	.	.	.	L	G	K	R	Q	S	M	P	L	L	I	G	P	T	A	L	N	G	A	L	W	P	K	G	D	L	A	L	A	R	A	A	T	K	A	G	I	P	F	V
Template Known Secondary structure								.	.	.	G	G	G	G							.	.		S				S	S		B						.	.	.	.	.	T	T				S	S	S							S		G	G	G	T	S	T	T													T
Template Predicted Secondary structure								.	.	.											.	.															.	.	.	.	.
Template SS confidence
		37	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		75	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure						.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	K	H	.	.	Y	S	V	E	E	W	Q	A	F	I	N	N	S	S	A	D	V	L	K	H	V	M	V	S	T	G	T	S	D	A	D	F	E	K	T	K	Q	I	L	D	L	N	P	A	L	N	F	V	C	I	D	V	A	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.										.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		L	S	T	A	S	N	M	S	I	E	D	L	A	R	Q	.	.	.	.	.	.	.	C	D	G	D	L	W	F	Q	L	Y	V	I	H	R	E	I	A	Q	G	M	V	L	K	A	L	H	T	G	Y	T	T	L	V	L	T	T	D	V	A	V	N	G	Y	R	E	R	D	L	H	N	R	F	K	I	P	P	F	L
Template Known Secondary structure				T	T		S	S									.	.	.	.	.	.	.			S									S	S														T	T									S		S	S											T					T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
																															134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	E	H	F	V	Q	F	V	A	K	A	R	E	A	W	P	T	K	T	I	C	A	G	N	V	V	T	G	E	M	C	E	E	L	I	L	S	G	A	D	I	V	K	V	G	I	G	P	G	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																																.
Template Sequence		T	L	K	N	F	E	G	I	D	L	G	K	M	D	K	A	N	L	E	M	Q	A	A	L	M	S	R	Q	M	D	A	S	F	N	W	E	A	L	R	W	L	R	D	L	W	P	.	H	K	L	L	V	K	G	L	L	S	A	E	D	A	D	R	C	I	A	E	G	A	D	G	V	I	L	S	N	H	G	G	R
Template Known Secondary structure				G	G	G	T	T				S			S	S	T	T	T							T	S	S				T	T															.	S									S										T	T		S							G	G	G	T
Template Predicted Secondary structure																																																.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	T	T	R	V	K	T	G	V	G	Y	P	Q	L	S	A	V	I	E	C	A	D	A	A	H	G	L	G	G	M	I	V	S	D	G	G	C	T	T	P	G	D	V	A	K	A	F	G	G	G	A	D	F	V	M	L	G	G	M	L	A	G	H	E	E	S	G	G	R	I	V	E	E	N	G	E	K	F	M
Query Conservation
Alig confidence				.	.	.	.	.	.																		.	.	.																																											.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.																		.	.	.																																											.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	.	.	.	.	.	.	D	C	A	I	S	P	M	E	V	L	A	Q	S	V	A	K	T	.	.	.	G	K	P	V	L	I	D	S	G	F	R	R	G	S	D	I	V	K	A	L	A	L	G	A	E	A	V	L	L	G	R	A	T	L	Y	G	L	A	A	R	G	E	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S		.	.	.	.	.	.	T	T				G	G	G	S									.	.	.		S						S	S			S										T	T		S					S													.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.																		.	.	.																																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		259	260							.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	Y	G	M	S	S	E	S	A	M	K	R	H	V	G	G	V	A	E	Y	R	A	A	E	G	K	T	V	K	L	P	L	R	G	P	V	E	N	T	A	R	D	I	L	G	G	L	R	S	A	C	T	Y	V	G	A	S	R	L	K	E	L	T	K	R	T	T	F	I	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	V	D	E	V	L	T	L	L	K	A	D	I	D	R	T	L	A	Q	I	G	C	P	D	I	T	S	L	S	P	.	.	D	Y	L	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						T			B	G	G	G			G	.	.	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template SS confidence
																																				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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