Return to main results Retrieve Phyre Job Id

Job DescriptionP60560
Confidence96.88%DateThu Jan 5 12:06:53 GMT 2012
Rank179Aligned Residues137
% Identity12%Templatec2a4aB_
PDB info PDB header:lyaseChain: B: PDB Molecule:deoxyribose-phosphate aldolase; PDBTitle: deoxyribose-phosphate aldolase from p. yoelii
Resolution1.84 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   104.....110.........120.........130. ........140.........150. ........160. ......
Predicted Secondary structure 










.....





.






..........
Query SS confidence 



























. . . . .



















.









. . . . . . . . . .





Query Sequence  GTSDADFEKTKQILDLNPALNFVCIDVA. . . . . NGYSEHFVQFVAKAREAWPT. KTICAGNVVT. . . . . . . . . . GEMCEE
Query Conservation                          
   .....          
  
      .  

 
 
 
.......... 
 
  
Alig confidence 



























.....



















.









..........





Template Conservation 
      
  
   

  

 


 


   
  
    
 

   
           






  
   
 
  
   
Template Sequence  GTDSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKTTLA
Template Known Secondary structure 

S
T
S

STTTS


S
Template Predicted Secondary structure 






















Template SS confidence 















































































   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   168.170.........180.........190.........200.........210 .........220.........230.... .
Predicted Secondary structure 























.........










...
Query SS confidence 










































. . . . . . . . .























. . .
Query Sequence  LILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAH. . . . . . . . . GLGGMIVSDGGCTTPGDVAKAFGG. . . G
Query Conservation 
  



 
 
 
 

           
 
    
        .........   




 



 
 

 




...
Alig confidence 




















..........











.........























...
Template Conservation 
  











   


..........   
  
   
          
  










   
   
 
  

Template Sequence  VLNGNADFIKTSTGKVQINAT. . . . . . . . . . PSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRF
Template Known Secondary structure  TTT
S


S
SS



..........
GGGTTT
SS

S
Template Predicted Secondary structure 













..........













Template SS confidence 















































































   162.......170.........180.. .......190.........200.........210.........220.........230.
 
   236...240.........250
Predicted Secondary structure 



Query SS confidence 














Query Sequence  ADFVMLGGMLAGHEE
Query Conservation 

 
 


 
    
Alig confidence 














Template Conservation 
 





   
  
Template Sequence  LFRIGSSSLVIKLRK
Template Known Secondary structure 

SS
Template Predicted Secondary structure 


Template SS confidence 














   232.......240......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions