Job Description P38134 Confidence 99.04% Date Thu Jan 5 11:58:01 GMT 2012 Rank 51 Aligned Residues 156 % Identity 22% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	F	A	M	M	E	T	E	N	N	I	L	M	I	T	G	A	T	P	D	S	G	K	T	F	V	S	S	T	L	A	A	V	I	A	Q	S	D	Q	K	V	L	F	I	D	A	D	L	R	R	G	Y	S	H	N	L	F	T	V	S	N	E	H	G	L	S	E	Y	L	A	G	K	D	E	L	N	K	V	I
Query Conservation
Alig confidence																					.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	.	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Template Known Secondary structure							T	S		S										T	.	T	S	S															T	T										T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																						.
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.		.	640	.	.	.	.	.	.	.	.	.						650	.	.	.	.	.	.	.	.	.	660	.	.	.	.			.	.	.	.	.	670	.	.	.
Predicted Secondary structure																																							.												.	.	.	.	.																.	.
Query SS confidence																																							.												.	.	.	.	.																.	.
Query Sequence		Q	H	F	G	K	G	G	F	D	V	I	T	R	G	Q	V	P	P	N	P	S	E	L	L	M	R	D	R	M	R	Q	L	L	E	W	A	N	.	D	H	Y	D	L	V	I	V	D	T	P	.	.	.	.	.	P	M	L	A	V	S	D	A	A	V	V	G	R	S	V	.	.	G	T	S	L	L	V	A	R	F
Query Conservation																																							.												.	.	.	.	.																.	.
Alig confidence																						.	.	.	.	.	.												.												.	.	.	.	.																.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A	.	.	.	.	.	.	A	V	A	Y	D	A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A
Template Known Secondary structure							T	T							S	T	T					.	.	.	.	.	.														T		S								S	S			S	S	S																S								T
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	N	T	A	K	E	V	S	L	S	M	Q	R	L	E	Q	A	G	V	N	I	K	G	A	I	L	N	G	V	I	K	R	A	S
Query Conservation
Alig confidence		.																		.	.
Template Conservation		.																		.	.
Template Sequence		.	L	A	G	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	.	.	K	I	D	G	I	I	L	T	K	L	D	A	D	A	R
Template Known Secondary structure		.	T		T	T	T												S	.	.									S	G	G	G		S	S
Template Predicted Secondary structure		.																		.	.
Template SS confidence
			246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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